Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3830 and Psyr_3831 are separated by 239 nucleotides Psyr_3831 and Psyr_3832 are separated by 173 nucleotides Psyr_3832 and Psyr_3833 overlap by 11 nucleotides
Psyr_3830: Psyr_3830 - 3-oxoacyl-[acyl-carrier protein] synthase, at 4,563,547 to 4,564,668
_3830
Psyr_3831: Psyr_3831 - ATP-dependent helicase HrpA, at 4,564,908 to 4,568,819
_3831
Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238
_3832
Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518
_3833
Position (kb) 4564
4565
4566
4567
4568
4569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4563.930 kb on + strand, within Psyr_3830 at 4564.098 kb on + strand, within Psyr_3830 at 4564.098 kb on + strand, within Psyr_3830 at 4564.098 kb on + strand, within Psyr_3830 at 4564.098 kb on + strand, within Psyr_3830 at 4564.306 kb on + strand, within Psyr_3830 at 4564.307 kb on - strand, within Psyr_3830 at 4564.307 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.367 kb on - strand, within Psyr_3830 at 4564.580 kb on + strand at 4564.580 kb on + strand at 4564.580 kb on + strand at 4564.580 kb on + strand at 4564.580 kb on + strand at 4564.580 kb on + strand at 4564.581 kb on - strand at 4564.581 kb on - strand at 4564.581 kb on - strand at 4564.581 kb on - strand at 4564.581 kb on - strand at 4564.696 kb on + strand at 4564.763 kb on + strand at 4564.764 kb on - strand at 4564.764 kb on - strand at 4564.862 kb on + strand at 4564.862 kb on + strand at 4564.863 kb on - strand at 4564.864 kb on + strand at 4564.864 kb on + strand at 4564.864 kb on + strand at 4564.864 kb on + strand at 4564.865 kb on - strand at 4564.865 kb on - strand at 4564.865 kb on - strand at 4564.865 kb on - strand at 4564.865 kb on - strand at 4564.884 kb on + strand at 4564.884 kb on + strand at 4564.885 kb on - strand at 4564.885 kb on - strand at 4564.885 kb on - strand at 4564.885 kb on - strand at 4564.999 kb on + strand at 4565.081 kb on - strand at 4566.229 kb on + strand, within Psyr_3831 at 4566.230 kb on - strand, within Psyr_3831 at 4566.367 kb on + strand, within Psyr_3831 at 4566.367 kb on + strand, within Psyr_3831 at 4566.367 kb on + strand, within Psyr_3831 at 4566.367 kb on + strand, within Psyr_3831 at 4566.368 kb on - strand, within Psyr_3831 at 4566.410 kb on + strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.411 kb on - strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.421 kb on + strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.422 kb on - strand, within Psyr_3831 at 4566.430 kb on + strand, within Psyr_3831 at 4566.430 kb on + strand, within Psyr_3831 at 4566.431 kb on - strand, within Psyr_3831 at 4566.455 kb on + strand, within Psyr_3831 at 4566.779 kb on - strand, within Psyr_3831 at 4567.051 kb on + strand, within Psyr_3831 at 4567.052 kb on - strand, within Psyr_3831 at 4567.131 kb on + strand, within Psyr_3831 at 4567.131 kb on + strand, within Psyr_3831 at 4567.131 kb on + strand, within Psyr_3831 at 4567.132 kb on - strand, within Psyr_3831 at 4567.564 kb on + strand, within Psyr_3831 at 4567.564 kb on + strand, within Psyr_3831 at 4567.564 kb on + strand, within Psyr_3831 at 4567.564 kb on + strand, within Psyr_3831 at 4567.565 kb on - strand, within Psyr_3831 at 4567.565 kb on - strand, within Psyr_3831 at 4567.565 kb on - strand, within Psyr_3831 at 4567.678 kb on + strand, within Psyr_3831 at 4567.678 kb on + strand, within Psyr_3831 at 4567.714 kb on + strand, within Psyr_3831 at 4567.715 kb on - strand, within Psyr_3831 at 4567.797 kb on - strand, within Psyr_3831 at 4567.797 kb on - strand, within Psyr_3831 at 4567.797 kb on - strand, within Psyr_3831 at 4567.797 kb on - strand, within Psyr_3831 at 4568.078 kb on + strand, within Psyr_3831 at 4568.078 kb on + strand, within Psyr_3831 at 4568.078 kb on + strand, within Psyr_3831 at 4568.078 kb on + strand, within Psyr_3831 at 4568.263 kb on + strand, within Psyr_3831 at 4568.453 kb on + strand at 4568.618 kb on - strand at 4568.908 kb on + strand at 4568.909 kb on - strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.236 kb on + strand at 4569.236 kb on + strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.378 kb on + strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.418 kb on - strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.487 kb on - strand, within Psyr_3833 at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.648 kb on - strand at 4569.744 kb on + strand at 4569.745 kb on - strand at 4569.745 kb on - strand at 4569.778 kb on + strand at 4569.778 kb on + strand at 4569.781 kb on - strand at 4569.781 kb on - strand at 4569.782 kb on + strand at 4569.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 4,563,930 + Psyr_3830 0.34 -0.3 4,564,098 + Psyr_3830 0.49 -0.1 4,564,098 + Psyr_3830 0.49 -0.4 4,564,098 + Psyr_3830 0.49 -0.6 4,564,098 + Psyr_3830 0.49 -0.5 4,564,306 + Psyr_3830 0.68 +1.9 4,564,307 - Psyr_3830 0.68 -0.5 4,564,307 - Psyr_3830 0.68 +0.2 4,564,367 - Psyr_3830 0.73 +0.4 4,564,367 - Psyr_3830 0.73 +0.1 4,564,367 - Psyr_3830 0.73 -0.9 4,564,367 - Psyr_3830 0.73 -0.4 4,564,367 - Psyr_3830 0.73 -0.8 4,564,367 - Psyr_3830 0.73 -0.2 4,564,367 - Psyr_3830 0.73 +1.9 4,564,367 - Psyr_3830 0.73 -1.1 4,564,580 + -0.7 4,564,580 + -0.5 4,564,580 + -1.1 4,564,580 + +0.6 4,564,580 + -0.1 4,564,580 + +1.4 4,564,581 - +0.9 4,564,581 - -0.1 4,564,581 - +0.5 4,564,581 - -0.5 4,564,581 - +0.1 4,564,696 + +0.0 4,564,763 + -0.6 4,564,764 - -0.4 4,564,764 - -0.9 4,564,862 + -1.1 4,564,862 + -0.4 4,564,863 - -0.2 4,564,864 + +0.9 4,564,864 + +0.1 4,564,864 + -0.1 4,564,864 + -1.5 4,564,865 - -0.6 4,564,865 - -0.4 4,564,865 - -0.6 4,564,865 - +0.0 4,564,865 - +1.2 4,564,884 + +0.5 4,564,884 + -1.1 4,564,885 - +0.2 4,564,885 - +0.6 4,564,885 - +0.0 4,564,885 - +0.9 4,564,999 + -1.4 4,565,081 - -1.6 4,566,229 + Psyr_3831 0.34 -1.4 4,566,230 - Psyr_3831 0.34 -1.6 4,566,367 + Psyr_3831 0.37 -2.0 4,566,367 + Psyr_3831 0.37 -2.4 4,566,367 + Psyr_3831 0.37 -2.1 4,566,367 + Psyr_3831 0.37 -2.7 4,566,368 - Psyr_3831 0.37 -2.2 4,566,410 + Psyr_3831 0.38 -0.4 4,566,411 - Psyr_3831 0.38 +0.9 4,566,411 - Psyr_3831 0.38 -2.5 4,566,411 - Psyr_3831 0.38 -0.5 4,566,411 - Psyr_3831 0.38 -0.5 4,566,411 - Psyr_3831 0.38 -1.6 4,566,411 - Psyr_3831 0.38 -1.1 4,566,411 - Psyr_3831 0.38 -2.9 4,566,421 + Psyr_3831 0.39 -1.5 4,566,421 + Psyr_3831 0.39 -1.6 4,566,421 + Psyr_3831 0.39 +0.9 4,566,421 + Psyr_3831 0.39 +1.7 4,566,421 + Psyr_3831 0.39 -1.4 4,566,421 + Psyr_3831 0.39 -0.3 4,566,421 + Psyr_3831 0.39 -2.5 4,566,421 + Psyr_3831 0.39 -0.6 4,566,421 + Psyr_3831 0.39 -1.7 4,566,422 - Psyr_3831 0.39 -2.1 4,566,422 - Psyr_3831 0.39 -2.8 4,566,422 - Psyr_3831 0.39 -2.6 4,566,422 - Psyr_3831 0.39 +0.4 4,566,422 - Psyr_3831 0.39 -1.9 4,566,422 - Psyr_3831 0.39 -2.1 4,566,422 - Psyr_3831 0.39 -2.2 4,566,422 - Psyr_3831 0.39 -1.3 4,566,422 - Psyr_3831 0.39 -1.1 4,566,422 - Psyr_3831 0.39 -1.6 4,566,430 + Psyr_3831 0.39 -1.9 4,566,430 + Psyr_3831 0.39 -1.7 4,566,431 - Psyr_3831 0.39 -1.9 4,566,455 + Psyr_3831 0.40 -1.1 4,566,779 - Psyr_3831 0.48 -0.2 4,567,051 + Psyr_3831 0.55 -1.6 4,567,052 - Psyr_3831 0.55 -0.8 4,567,131 + Psyr_3831 0.57 -1.1 4,567,131 + Psyr_3831 0.57 -1.4 4,567,131 + Psyr_3831 0.57 -0.6 4,567,132 - Psyr_3831 0.57 -1.6 4,567,564 + Psyr_3831 0.68 -1.9 4,567,564 + Psyr_3831 0.68 -1.1 4,567,564 + Psyr_3831 0.68 -1.5 4,567,564 + Psyr_3831 0.68 -2.1 4,567,565 - Psyr_3831 0.68 -0.3 4,567,565 - Psyr_3831 0.68 -2.4 4,567,565 - Psyr_3831 0.68 -2.3 4,567,678 + Psyr_3831 0.71 -1.6 4,567,678 + Psyr_3831 0.71 -0.2 4,567,714 + Psyr_3831 0.72 -1.6 4,567,715 - Psyr_3831 0.72 -2.6 4,567,797 - Psyr_3831 0.74 -1.3 4,567,797 - Psyr_3831 0.74 -1.2 4,567,797 - Psyr_3831 0.74 +0.4 4,567,797 - Psyr_3831 0.74 +0.2 4,568,078 + Psyr_3831 0.81 -1.9 4,568,078 + Psyr_3831 0.81 -2.6 4,568,078 + Psyr_3831 0.81 -2.8 4,568,078 + Psyr_3831 0.81 -1.9 4,568,263 + Psyr_3831 0.86 -1.2 4,568,453 + -2.0 4,568,618 - -0.6 4,568,908 + -0.6 4,568,909 - -0.6 4,569,223 + -1.0 4,569,223 + -0.1 4,569,223 + +0.9 4,569,223 + -0.2 4,569,223 + -3.1 4,569,223 + -0.8 4,569,224 - -0.6 4,569,224 - -0.7 4,569,225 + -0.8 4,569,225 + +0.9 4,569,225 + -1.3 4,569,225 + +0.9 4,569,225 + -2.4 4,569,225 + +1.7 4,569,225 + -0.9 4,569,225 + +0.1 4,569,225 + +0.3 4,569,225 + -1.1 4,569,225 + -0.4 4,569,225 + -1.6 4,569,225 + +0.6 4,569,225 + -0.1 4,569,225 + -0.0 4,569,225 + +0.4 4,569,225 + -1.9 4,569,225 + -0.6 4,569,225 + +0.5 4,569,225 + -0.1 4,569,225 + -2.2 4,569,225 + +0.8 4,569,225 + +0.2 4,569,225 + -2.4 4,569,225 + +0.6 4,569,225 + -0.1 4,569,225 + -1.4 4,569,225 + -1.1 4,569,225 + -0.4 4,569,225 + -0.9 4,569,225 + -0.7 4,569,225 + +0.9 4,569,225 + +0.1 4,569,225 + -0.2 4,569,225 + -0.3 4,569,226 - -2.1 4,569,226 - +1.9 4,569,226 - -1.1 4,569,226 - -0.1 4,569,226 - +0.1 4,569,226 - -0.6 4,569,226 - +0.2 4,569,226 - +0.2 4,569,226 - -1.1 4,569,226 - -0.9 4,569,226 - -0.4 4,569,226 - +0.8 4,569,226 - -2.5 4,569,226 - -0.2 4,569,226 - +0.4 4,569,226 - +0.1 4,569,226 - -0.1 4,569,226 - -1.1 4,569,226 - -0.4 4,569,226 - -0.1 4,569,226 - -0.3 4,569,226 - +0.0 4,569,226 - -0.3 4,569,226 - -0.6 4,569,226 - +0.2 4,569,226 - +0.1 4,569,226 - -1.3 4,569,226 - -0.8 4,569,226 - +0.8 4,569,226 - -1.3 4,569,226 - -0.6 4,569,226 - -0.1 4,569,226 - -0.2 4,569,226 - -0.7 4,569,226 - -1.1 4,569,236 + -1.1 4,569,236 + -0.3 4,569,237 - -0.1 4,569,237 - +0.1 4,569,237 - -0.3 4,569,378 + Psyr_3833 0.52 +1.6 4,569,378 + Psyr_3833 0.52 +1.3 4,569,418 - Psyr_3833 0.65 -0.4 4,569,434 + Psyr_3833 0.71 +0.3 4,569,434 + Psyr_3833 0.71 -0.6 4,569,434 + Psyr_3833 0.71 +0.4 4,569,434 + Psyr_3833 0.71 +0.1 4,569,435 - Psyr_3833 0.71 +1.7 4,569,435 - Psyr_3833 0.71 -1.0 4,569,435 - Psyr_3833 0.71 -0.2 4,569,482 + Psyr_3833 0.87 +0.9 4,569,486 + Psyr_3833 0.89 -0.3 4,569,486 + Psyr_3833 0.89 -0.6 4,569,486 + Psyr_3833 0.89 -0.3 4,569,487 - Psyr_3833 0.89 -0.3 4,569,538 - -0.9 4,569,538 - -0.4 4,569,538 - -1.9 4,569,648 - +0.9 4,569,744 + +1.9 4,569,745 - +0.3 4,569,745 - +0.1 4,569,778 + +0.3 4,569,778 + -1.0 4,569,781 - +0.9 4,569,781 - +0.4 4,569,782 + -1.6 4,569,783 - +1.4
Or see this region's nucleotide sequence