Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3597

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3595 and Psyr_3596 are separated by 93 nucleotidesPsyr_3596 and Psyr_3597 are separated by 52 nucleotidesPsyr_3597 and Psyr_3598 are separated by 4 nucleotides Psyr_3595: Psyr_3595 - Metallophosphoesterase, at 4,276,978 to 4,277,799 _3595 Psyr_3596: Psyr_3596 - Selenoprotein W-related protein, at 4,277,893 to 4,278,195 _3596 Psyr_3597: Psyr_3597 - ABC transporter, at 4,278,248 to 4,279,072 _3597 Psyr_3598: Psyr_3598 - Binding-protein-dependent transport systems inner membrane component, at 4,279,077 to 4,279,934 _3598 Position (kb) 4278 4279 4280Strain fitness (log2 ratio) -2 -1 0 1 2at 4277.300 kb on + strand, within Psyr_3595at 4277.300 kb on + strand, within Psyr_3595at 4277.300 kb on + strand, within Psyr_3595at 4277.301 kb on - strand, within Psyr_3595at 4277.301 kb on - strand, within Psyr_3595at 4277.301 kb on - strand, within Psyr_3595at 4277.351 kb on + strand, within Psyr_3595at 4277.388 kb on - strand, within Psyr_3595at 4277.537 kb on + strand, within Psyr_3595at 4277.538 kb on - strand, within Psyr_3595at 4277.538 kb on - strand, within Psyr_3595at 4277.538 kb on - strand, within Psyr_3595at 4277.538 kb on - strand, within Psyr_3595at 4277.538 kb on - strand, within Psyr_3595at 4277.609 kb on + strand, within Psyr_3595at 4277.609 kb on + strand, within Psyr_3595at 4277.609 kb on + strand, within Psyr_3595at 4277.610 kb on - strand, within Psyr_3595at 4277.610 kb on - strand, within Psyr_3595at 4277.610 kb on - strand, within Psyr_3595at 4277.610 kb on - strand, within Psyr_3595at 4277.610 kb on - strand, within Psyr_3595at 4277.657 kb on + strand, within Psyr_3595at 4277.658 kb on - strand, within Psyr_3595at 4277.658 kb on - strand, within Psyr_3595at 4277.801 kb on + strandat 4277.801 kb on + strandat 4277.891 kb on + strandat 4277.891 kb on + strandat 4277.891 kb on + strandat 4277.891 kb on + strandat 4277.892 kb on - strandat 4277.894 kb on + strandat 4277.895 kb on - strandat 4277.895 kb on - strandat 4277.913 kb on + strandat 4277.913 kb on + strandat 4277.913 kb on + strandat 4277.913 kb on + strandat 4277.914 kb on - strandat 4278.039 kb on + strand, within Psyr_3596at 4278.039 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.162 kb on - strand, within Psyr_3596at 4278.230 kb on + strandat 4278.231 kb on - strandat 4278.752 kb on - strand, within Psyr_3597at 4279.010 kb on + strandat 4279.011 kb on - strandat 4279.011 kb on - strandat 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.166 kb on - strand, within Psyr_3598at 4279.181 kb on + strand, within Psyr_3598at 4279.287 kb on - strand, within Psyr_3598at 4279.298 kb on - strand, within Psyr_3598at 4279.938 kb on + strandat 4279.938 kb on + strandat 4279.938 kb on + strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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4,277,300 + Psyr_3595 0.39 -0.8
4,277,300 + Psyr_3595 0.39 +0.9
4,277,300 + Psyr_3595 0.39 +0.9
4,277,301 - Psyr_3595 0.39 +0.3
4,277,301 - Psyr_3595 0.39 +0.7
4,277,301 - Psyr_3595 0.39 +0.6
4,277,351 + Psyr_3595 0.45 +0.1
4,277,388 - Psyr_3595 0.50 -1.1
4,277,537 + Psyr_3595 0.68 -1.6
4,277,538 - Psyr_3595 0.68 -2.7
4,277,538 - Psyr_3595 0.68 -0.1
4,277,538 - Psyr_3595 0.68 +0.6
4,277,538 - Psyr_3595 0.68 -0.8
4,277,538 - Psyr_3595 0.68 -0.5
4,277,609 + Psyr_3595 0.77 -0.6
4,277,609 + Psyr_3595 0.77 -0.5
4,277,609 + Psyr_3595 0.77 +0.6
4,277,610 - Psyr_3595 0.77 +0.3
4,277,610 - Psyr_3595 0.77 -0.6
4,277,610 - Psyr_3595 0.77 -0.7
4,277,610 - Psyr_3595 0.77 -1.0
4,277,610 - Psyr_3595 0.77 +0.9
4,277,657 + Psyr_3595 0.83 -1.6
4,277,658 - Psyr_3595 0.83 +0.0
4,277,658 - Psyr_3595 0.83 +0.8
4,277,801 + -0.0
4,277,801 + +0.9
4,277,891 + +0.0
4,277,891 + -0.3
4,277,891 + +0.9
4,277,891 + +0.3
4,277,892 - -1.2
4,277,894 + -1.1
4,277,895 - +0.4
4,277,895 - +0.7
4,277,913 + -0.7
4,277,913 + -0.9
4,277,913 + -0.4
4,277,913 + -0.7
4,277,914 - +0.5
4,278,039 + Psyr_3596 0.48 -1.2
4,278,039 + Psyr_3596 0.48 -0.5
4,278,161 + Psyr_3596 0.88 +2.5
4,278,161 + Psyr_3596 0.88 +0.1
4,278,161 + Psyr_3596 0.88 +0.0
4,278,161 + Psyr_3596 0.88 +0.1
4,278,162 - Psyr_3596 0.89 +0.5
4,278,230 + +1.6
4,278,231 - +0.6
4,278,752 - Psyr_3597 0.61 -0.8
4,279,010 + -0.6
4,279,011 - -0.9
4,279,011 - -0.4
4,279,165 + Psyr_3598 0.10 +0.1
4,279,165 + Psyr_3598 0.10 -0.8
4,279,165 + Psyr_3598 0.10 +0.1
4,279,165 + Psyr_3598 0.10 +1.2
4,279,165 + Psyr_3598 0.10 +1.4
4,279,165 + Psyr_3598 0.10 -0.8
4,279,165 + Psyr_3598 0.10 +0.5
4,279,166 - Psyr_3598 0.10 -0.4
4,279,181 + Psyr_3598 0.12 +1.3
4,279,287 - Psyr_3598 0.24 +0.6
4,279,298 - Psyr_3598 0.26 +0.5
4,279,938 + -2.0
4,279,938 + -1.1
4,279,938 + -2.6
4,279,939 - +0.2
4,279,939 - -0.2
4,279,939 - -0.4
4,279,939 - -0.8
4,279,939 - +0.1
4,279,939 - +1.1
4,279,982 - -1.4

Or see this region's nucleotide sequence