Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3082

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3081 and Psyr_3082 are separated by 16 nucleotidesPsyr_3082 and Psyr_3083 are separated by 19 nucleotides Psyr_3081: Psyr_3081 - Secretion protein HlyD, at 3,686,678 to 3,687,811 _3081 Psyr_3082: Psyr_3082 - MltA-interacting MipA, at 3,687,828 to 3,688,676 _3082 Psyr_3083: Psyr_3083 - RND efflux system, outer membrane lipoprotein, NodT, at 3,688,696 to 3,690,168 _3083 Position (kb) 3687 3688 3689Strain fitness (log2 ratio) -2 -1 0 1at 3687.423 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.746 kb on + strandat 3687.839 kb on - strandat 3687.911 kb on - strandat 3687.959 kb on + strand, within Psyr_3082at 3687.959 kb on + strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.991 kb on + strand, within Psyr_3082at 3688.061 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.275 kb on - strand, within Psyr_3082at 3688.483 kb on + strand, within Psyr_3082at 3688.631 kb on + strandat 3688.632 kb on - strandat 3688.656 kb on - strandat 3689.053 kb on - strand, within Psyr_3083at 3689.171 kb on - strand, within Psyr_3083at 3689.331 kb on + strand, within Psyr_3083at 3689.654 kb on + strand, within Psyr_3083

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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3,687,423 + Psyr_3081 0.66 -1.2
3,687,427 + Psyr_3081 0.66 -0.9
3,687,427 + Psyr_3081 0.66 +1.6
3,687,428 - Psyr_3081 0.66 +0.8
3,687,428 - Psyr_3081 0.66 +0.6
3,687,746 + +0.5
3,687,839 - -0.4
3,687,911 - +0.5
3,687,959 + Psyr_3082 0.15 -0.4
3,687,959 + Psyr_3082 0.15 -2.7
3,687,960 - Psyr_3082 0.16 +0.6
3,687,960 - Psyr_3082 0.16 -0.5
3,687,960 - Psyr_3082 0.16 -0.7
3,687,991 + Psyr_3082 0.19 -0.7
3,688,061 - Psyr_3082 0.27 -0.0
3,688,073 - Psyr_3082 0.29 -1.2
3,688,073 - Psyr_3082 0.29 -2.3
3,688,275 - Psyr_3082 0.53 -0.3
3,688,483 + Psyr_3082 0.77 +0.6
3,688,631 + +0.0
3,688,632 - +0.6
3,688,656 - +1.0
3,689,053 - Psyr_3083 0.24 -0.2
3,689,171 - Psyr_3083 0.32 -0.9
3,689,331 + Psyr_3083 0.43 -0.6
3,689,654 + Psyr_3083 0.65 -0.1

Or see this region's nucleotide sequence