Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3055

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3054 and Psyr_3055 overlap by 4 nucleotidesPsyr_3055 and Psyr_3056 are separated by 10 nucleotides Psyr_3054: Psyr_3054 - Choline/ethanolamine kinase:Aminoglycoside phosphotransferase, at 3,651,609 to 3,652,544 _3054 Psyr_3055: Psyr_3055 - Aminoglycoside phosphotransferase, at 3,652,541 to 3,653,494 _3055 Psyr_3056: Psyr_3056 - Amidase, hydantoinase/carbamoylase, at 3,653,505 to 3,654,785 _3056 Position (kb) 3652 3653 3654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3651.559 kb on + strandat 3651.568 kb on - strandat 3651.568 kb on - strandat 3651.686 kb on - strandat 3651.691 kb on + strandat 3651.692 kb on - strandat 3651.814 kb on + strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.907 kb on + strand, within Psyr_3054at 3652.030 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.186 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.451 kb on - strandat 3652.716 kb on + strand, within Psyr_3055at 3652.855 kb on - strand, within Psyr_3055at 3653.328 kb on + strand, within Psyr_3055at 3653.329 kb on - strand, within Psyr_3055at 3653.487 kb on + strandat 3653.488 kb on - strandat 3653.488 kb on - strandat 3653.731 kb on - strand, within Psyr_3056at 3653.731 kb on - strand, within Psyr_3056at 3653.944 kb on + strand, within Psyr_3056at 3654.100 kb on - strand, within Psyr_3056at 3654.473 kb on - strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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3,651,559 + -0.0
3,651,568 - +0.2
3,651,568 - +1.4
3,651,686 - -2.8
3,651,691 + -2.0
3,651,692 - +0.1
3,651,814 + Psyr_3054 0.22 +0.8
3,651,815 - Psyr_3054 0.22 -0.7
3,651,815 - Psyr_3054 0.22 +1.8
3,651,815 - Psyr_3054 0.22 +0.8
3,651,907 + Psyr_3054 0.32 +0.8
3,652,030 + Psyr_3054 0.45 +0.6
3,652,185 + Psyr_3054 0.62 -1.8
3,652,185 + Psyr_3054 0.62 -0.5
3,652,185 + Psyr_3054 0.62 -0.8
3,652,185 + Psyr_3054 0.62 -0.6
3,652,185 + Psyr_3054 0.62 -0.9
3,652,186 - Psyr_3054 0.62 -0.0
3,652,382 - Psyr_3054 0.83 +0.8
3,652,382 - Psyr_3054 0.83 -0.2
3,652,382 - Psyr_3054 0.83 +0.2
3,652,382 - Psyr_3054 0.83 -0.2
3,652,451 - -0.4
3,652,716 + Psyr_3055 0.18 -0.8
3,652,855 - Psyr_3055 0.33 -0.9
3,653,328 + Psyr_3055 0.82 -0.9
3,653,329 - Psyr_3055 0.83 +0.2
3,653,487 + -1.0
3,653,488 - -0.5
3,653,488 - +0.8
3,653,731 - Psyr_3056 0.18 +0.5
3,653,731 - Psyr_3056 0.18 -1.2
3,653,944 + Psyr_3056 0.34 +0.8
3,654,100 - Psyr_3056 0.46 -0.8
3,654,473 - Psyr_3056 0.76 -1.1
3,654,474 + Psyr_3056 0.76 -0.1
3,654,474 + Psyr_3056 0.76 +0.8
3,654,474 + Psyr_3056 0.76 -0.3
3,654,474 + Psyr_3056 0.76 +0.8
3,654,474 + Psyr_3056 0.76 +0.8
3,654,474 + Psyr_3056 0.76 +0.4
3,654,474 + Psyr_3056 0.76 -0.8
3,654,474 + Psyr_3056 0.76 -1.1
3,654,474 + Psyr_3056 0.76 -0.2
3,654,475 - Psyr_3056 0.76 -0.5
3,654,475 - Psyr_3056 0.76 +0.3
3,654,475 - Psyr_3056 0.76 -1.0
3,654,475 - Psyr_3056 0.76 +0.8
3,654,475 - Psyr_3056 0.76 -0.2
3,654,475 - Psyr_3056 0.76 +0.8
3,654,475 - Psyr_3056 0.76 -0.2
3,654,475 - Psyr_3056 0.76 -0.4

Or see this region's nucleotide sequence