Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2617
Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Erythromycin 25 ug/ml |
---|---|---|---|---|---|
remove | |||||
3,172,137 | + | +0.7 | |||
3,172,137 | + | -1.3 | |||
3,172,338 | + | -1.9 | |||
3,172,404 | - | +0.4 | |||
3,172,506 | + | +0.7 | |||
3,172,785 | + | Psyr_2617 | 0.33 | +0.7 | |
3,172,786 | - | Psyr_2617 | 0.33 | -1.0 | |
3,172,947 | + | Psyr_2617 | 0.47 | -1.9 | |
3,173,131 | - | Psyr_2617 | 0.63 | -3.4 | |
3,173,759 | + | +0.7 | |||
3,173,759 | + | -1.6 | |||
3,173,900 | - | Psyr_2618 | 0.17 | +0.9 | |
3,173,900 | - | Psyr_2618 | 0.17 | +0.9 | |
3,174,509 | - | Psyr_2618 | 0.48 | -0.3 |
Or see this region's nucleotide sequence