Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2597

Experiment: KB with Erythromycin 25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2596 and Psyr_2597 are separated by 273 nucleotidesPsyr_2597 and Psyr_2598 are separated by 305 nucleotides Psyr_2596: Psyr_2596 - PAS, at 3,042,083 to 3,043,444 _2596 Psyr_2597: Psyr_2597 - diguanylate cyclase/phosphodiesterase, at 3,043,718 to 3,045,322 _2597 Psyr_2598: Psyr_2598 - conserved hypothetical protein, putative DNA helicase, at 3,045,628 to 3,051,465 _2598 Position (kb) 3043 3044 3045 3046Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3042.728 kb on + strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.729 kb on - strand, within Psyr_2596at 3042.766 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.810 kb on + strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.811 kb on - strand, within Psyr_2596at 3042.862 kb on + strand, within Psyr_2596at 3042.863 kb on - strand, within Psyr_2596at 3043.257 kb on + strand, within Psyr_2596at 3043.442 kb on + strandat 3043.442 kb on + strandat 3043.530 kb on + strandat 3043.531 kb on - strandat 3043.531 kb on - strandat 3043.556 kb on + strandat 3043.558 kb on + strandat 3043.567 kb on + strandat 3043.585 kb on + strandat 3043.638 kb on + strandat 3043.678 kb on + strandat 3043.678 kb on + strandat 3043.678 kb on + strandat 3043.679 kb on - strandat 3043.679 kb on - strandat 3043.679 kb on - strandat 3043.680 kb on + strandat 3043.680 kb on + strandat 3043.713 kb on + strandat 3043.713 kb on + strandat 3043.713 kb on + strandat 3043.713 kb on + strandat 3043.714 kb on - strandat 3043.714 kb on - strandat 3043.717 kb on + strandat 3043.750 kb on + strandat 3043.751 kb on - strandat 3043.761 kb on - strandat 3043.767 kb on + strandat 3043.778 kb on + strandat 3043.779 kb on - strandat 3043.789 kb on + strandat 3043.789 kb on + strandat 3043.790 kb on - strandat 3043.985 kb on + strand, within Psyr_2597at 3043.985 kb on + strand, within Psyr_2597at 3043.985 kb on + strand, within Psyr_2597at 3043.985 kb on + strand, within Psyr_2597at 3043.986 kb on - strand, within Psyr_2597at 3044.462 kb on + strand, within Psyr_2597at 3044.581 kb on + strand, within Psyr_2597at 3044.582 kb on - strand, within Psyr_2597at 3044.594 kb on + strand, within Psyr_2597at 3044.594 kb on + strand, within Psyr_2597at 3044.595 kb on - strand, within Psyr_2597at 3044.791 kb on + strand, within Psyr_2597at 3044.792 kb on - strand, within Psyr_2597at 3044.809 kb on + strand, within Psyr_2597at 3044.810 kb on - strand, within Psyr_2597at 3044.810 kb on - strand, within Psyr_2597at 3045.536 kb on + strandat 3045.537 kb on - strandat 3045.537 kb on - strandat 3045.538 kb on + strandat 3045.538 kb on + strandat 3045.538 kb on + strandat 3045.538 kb on + strandat 3045.538 kb on + strandat 3045.538 kb on + strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.539 kb on - strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.570 kb on + strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.571 kb on - strandat 3045.572 kb on + strandat 3045.572 kb on + strandat 3045.572 kb on + strandat 3045.572 kb on + strandat 3045.594 kb on + strandat 3045.595 kb on - strandat 3045.702 kb on - strandat 3045.714 kb on + strandat 3045.761 kb on + strandat 3045.761 kb on + strandat 3045.803 kb on + strandat 3045.804 kb on - strandat 3045.804 kb on - strandat 3045.868 kb on + strandat 3045.868 kb on + strandat 3045.868 kb on + strandat 3045.935 kb on + strandat 3046.192 kb on + strandat 3046.192 kb on + strandat 3046.192 kb on + strandat 3046.193 kb on - strandat 3046.193 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
remove
3,042,728 + Psyr_2596 0.47 -0.1
3,042,729 - Psyr_2596 0.47 -0.3
3,042,729 - Psyr_2596 0.47 -0.2
3,042,729 - Psyr_2596 0.47 -1.3
3,042,729 - Psyr_2596 0.47 -0.1
3,042,729 - Psyr_2596 0.47 -1.6
3,042,729 - Psyr_2596 0.47 -1.1
3,042,766 + Psyr_2596 0.50 +1.1
3,042,810 + Psyr_2596 0.53 +0.5
3,042,810 + Psyr_2596 0.53 -1.4
3,042,810 + Psyr_2596 0.53 -0.9
3,042,810 + Psyr_2596 0.53 -0.6
3,042,810 + Psyr_2596 0.53 -2.7
3,042,810 + Psyr_2596 0.53 +0.1
3,042,810 + Psyr_2596 0.53 -0.5
3,042,810 + Psyr_2596 0.53 +0.1
3,042,810 + Psyr_2596 0.53 -0.3
3,042,811 - Psyr_2596 0.53 -0.3
3,042,811 - Psyr_2596 0.53 -1.0
3,042,811 - Psyr_2596 0.53 +3.0
3,042,811 - Psyr_2596 0.53 +1.1
3,042,811 - Psyr_2596 0.53 +1.7
3,042,811 - Psyr_2596 0.53 -1.3
3,042,811 - Psyr_2596 0.53 -0.6
3,042,811 - Psyr_2596 0.53 +1.2
3,042,811 - Psyr_2596 0.53 -0.1
3,042,862 + Psyr_2596 0.57 -0.9
3,042,863 - Psyr_2596 0.57 -0.5
3,043,257 + Psyr_2596 0.86 +0.7
3,043,442 + -1.3
3,043,442 + -0.0
3,043,530 + -0.3
3,043,531 - +0.9
3,043,531 - -3.5
3,043,556 + -1.9
3,043,558 + -0.9
3,043,567 + +0.7
3,043,585 + +0.9
3,043,638 + -0.6
3,043,678 + -0.1
3,043,678 + +0.7
3,043,678 + -1.4
3,043,679 - +0.6
3,043,679 - +0.7
3,043,679 - -0.2
3,043,680 + -0.5
3,043,680 + -1.1
3,043,713 + -0.8
3,043,713 + +0.3
3,043,713 + +0.5
3,043,713 + -0.4
3,043,714 - -0.1
3,043,714 - +0.7
3,043,717 + -1.1
3,043,750 + -1.0
3,043,751 - -1.2
3,043,761 - +0.0
3,043,767 + -0.4
3,043,778 + +0.4
3,043,779 - -1.2
3,043,789 + +1.0
3,043,789 + -1.6
3,043,790 - +1.3
3,043,985 + Psyr_2597 0.17 -0.6
3,043,985 + Psyr_2597 0.17 +0.7
3,043,985 + Psyr_2597 0.17 -0.9
3,043,985 + Psyr_2597 0.17 -0.5
3,043,986 - Psyr_2597 0.17 +1.7
3,044,462 + Psyr_2597 0.46 -0.5
3,044,581 + Psyr_2597 0.54 -0.6
3,044,582 - Psyr_2597 0.54 +0.5
3,044,594 + Psyr_2597 0.55 +0.9
3,044,594 + Psyr_2597 0.55 +2.0
3,044,595 - Psyr_2597 0.55 +0.3
3,044,791 + Psyr_2597 0.67 +0.7
3,044,792 - Psyr_2597 0.67 +0.9
3,044,809 + Psyr_2597 0.68 +0.5
3,044,810 - Psyr_2597 0.68 -1.0
3,044,810 - Psyr_2597 0.68 +0.4
3,045,536 + +0.3
3,045,537 - +0.1
3,045,537 - +0.1
3,045,538 + +2.7
3,045,538 + -1.3
3,045,538 + +1.1
3,045,538 + +0.5
3,045,538 + -0.4
3,045,538 + -1.3
3,045,539 - -2.0
3,045,539 - -0.7
3,045,539 - -0.7
3,045,539 - -0.6
3,045,539 - -2.0
3,045,539 - -1.3
3,045,539 - -1.8
3,045,539 - +1.3
3,045,539 - -0.7
3,045,570 + -0.5
3,045,570 + +0.3
3,045,570 + +0.4
3,045,570 + -1.9
3,045,570 + +1.1
3,045,570 + +0.4
3,045,570 + +0.5
3,045,570 + -0.4
3,045,570 + -0.7
3,045,571 - +0.2
3,045,571 - +2.3
3,045,571 - +1.7
3,045,571 - +0.7
3,045,571 - -0.9
3,045,571 - -0.3
3,045,571 - -0.5
3,045,572 + -0.7
3,045,572 + -1.3
3,045,572 + +0.6
3,045,572 + -0.9
3,045,594 + -0.5
3,045,595 - +1.7
3,045,702 - -0.4
3,045,714 + -0.9
3,045,761 + -0.4
3,045,761 + -2.3
3,045,803 + -2.1
3,045,804 - +0.9
3,045,804 - -0.3
3,045,868 + -1.1
3,045,868 + -0.0
3,045,868 + +1.2
3,045,935 + +0.4
3,046,192 + +1.0
3,046,192 + +0.9
3,046,192 + -0.0
3,046,193 - -1.6
3,046,193 - +0.2

Or see this region's nucleotide sequence