Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2327

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2325 and Psyr_2326 are separated by 17 nucleotidesPsyr_2326 and Psyr_2327 are separated by 39 nucleotidesPsyr_2327 and Psyr_2328 are separated by 264 nucleotides Psyr_2325: Psyr_2325 - conserved hypothetical protein, at 2,703,007 to 2,703,525 _2325 Psyr_2326: Psyr_2326 - lipoprotein, putative, at 2,703,543 to 2,704,076 _2326 Psyr_2327: Psyr_2327 - GTP cyclohydrolase subunit MoaA, at 2,704,116 to 2,705,114 _2327 Psyr_2328: Psyr_2328 - sodium/proton antiporter, CPA1 family, at 2,705,379 to 2,706,725 _2328 Position (kb) 2704 2705 2706Strain fitness (log2 ratio) -2 -1 0 1 2at 2703.136 kb on + strand, within Psyr_2325at 2703.138 kb on + strand, within Psyr_2325at 2703.205 kb on + strand, within Psyr_2325at 2703.205 kb on + strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.264 kb on + strand, within Psyr_2325at 2703.265 kb on - strand, within Psyr_2325at 2703.265 kb on - strand, within Psyr_2325at 2703.367 kb on + strand, within Psyr_2325at 2703.368 kb on - strand, within Psyr_2325at 2703.368 kb on - strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.583 kb on + strandat 2703.583 kb on + strandat 2703.584 kb on - strandat 2703.584 kb on - strandat 2703.584 kb on - strandat 2703.654 kb on + strand, within Psyr_2326at 2703.654 kb on + strand, within Psyr_2326at 2703.655 kb on - strand, within Psyr_2326at 2703.655 kb on - strand, within Psyr_2326at 2703.722 kb on + strand, within Psyr_2326at 2703.722 kb on + strand, within Psyr_2326at 2703.723 kb on - strand, within Psyr_2326at 2703.879 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.975 kb on + strand, within Psyr_2326at 2703.975 kb on + strand, within Psyr_2326at 2703.976 kb on - strand, within Psyr_2326at 2704.074 kb on + strandat 2704.075 kb on - strandat 2704.075 kb on - strandat 2704.088 kb on + strandat 2704.130 kb on + strandat 2704.130 kb on + strandat 2704.130 kb on + strandat 2704.349 kb on + strand, within Psyr_2327at 2704.350 kb on - strand, within Psyr_2327at 2704.492 kb on + strand, within Psyr_2327at 2704.492 kb on + strand, within Psyr_2327at 2704.686 kb on + strand, within Psyr_2327at 2704.687 kb on - strand, within Psyr_2327at 2704.687 kb on - strand, within Psyr_2327at 2704.891 kb on - strand, within Psyr_2327at 2704.891 kb on - strand, within Psyr_2327at 2705.023 kb on + strandat 2705.023 kb on + strandat 2705.024 kb on - strandat 2705.078 kb on + strandat 2705.078 kb on + strandat 2705.079 kb on - strandat 2705.079 kb on - strandat 2705.079 kb on - strandat 2705.079 kb on - strandat 2705.079 kb on - strandat 2705.079 kb on - strandat 2705.124 kb on + strandat 2705.125 kb on - strandat 2705.125 kb on - strandat 2705.125 kb on - strandat 2705.125 kb on - strandat 2705.128 kb on + strandat 2705.128 kb on + strandat 2705.129 kb on - strandat 2705.143 kb on + strandat 2705.143 kb on + strandat 2705.144 kb on - strandat 2705.144 kb on - strandat 2705.144 kb on - strandat 2705.171 kb on - strandat 2705.251 kb on + strandat 2705.251 kb on + strandat 2705.251 kb on + strandat 2705.251 kb on + strandat 2705.251 kb on + strandat 2705.251 kb on + strandat 2705.252 kb on - strandat 2705.252 kb on - strandat 2705.252 kb on - strandat 2705.335 kb on + strandat 2705.335 kb on + strandat 2705.539 kb on + strand, within Psyr_2328at 2705.540 kb on - strand, within Psyr_2328at 2705.542 kb on + strand, within Psyr_2328at 2705.542 kb on + strand, within Psyr_2328at 2705.543 kb on - strand, within Psyr_2328at 2705.692 kb on + strand, within Psyr_2328at 2705.692 kb on + strand, within Psyr_2328at 2705.693 kb on - strand, within Psyr_2328at 2705.693 kb on - strand, within Psyr_2328at 2705.693 kb on - strand, within Psyr_2328at 2705.858 kb on + strand, within Psyr_2328at 2705.858 kb on + strand, within Psyr_2328at 2705.858 kb on + strand, within Psyr_2328at 2705.858 kb on + strand, within Psyr_2328at 2705.858 kb on + strand, within Psyr_2328at 2705.859 kb on - strand, within Psyr_2328at 2705.916 kb on + strand, within Psyr_2328at 2705.916 kb on + strand, within Psyr_2328at 2705.916 kb on + strand, within Psyr_2328at 2705.916 kb on + strand, within Psyr_2328at 2705.916 kb on + strand, within Psyr_2328at 2705.917 kb on - strand, within Psyr_2328at 2705.917 kb on - strand, within Psyr_2328at 2705.917 kb on - strand, within Psyr_2328at 2705.917 kb on - strand, within Psyr_2328at 2705.991 kb on + strand, within Psyr_2328at 2705.991 kb on + strand, within Psyr_2328at 2705.992 kb on - strand, within Psyr_2328at 2705.995 kb on + strand, within Psyr_2328at 2705.995 kb on + strand, within Psyr_2328at 2705.996 kb on - strand, within Psyr_2328at 2705.996 kb on - strand, within Psyr_2328

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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2,703,136 + Psyr_2325 0.25 +0.4
2,703,138 + Psyr_2325 0.25 +0.3
2,703,205 + Psyr_2325 0.38 +0.0
2,703,205 + Psyr_2325 0.38 +0.1
2,703,206 - Psyr_2325 0.38 +0.5
2,703,206 - Psyr_2325 0.38 +0.3
2,703,206 - Psyr_2325 0.38 -0.2
2,703,206 - Psyr_2325 0.38 -0.2
2,703,206 - Psyr_2325 0.38 +0.1
2,703,264 + Psyr_2325 0.50 +0.1
2,703,265 - Psyr_2325 0.50 -0.8
2,703,265 - Psyr_2325 0.50 +0.6
2,703,367 + Psyr_2325 0.69 -0.8
2,703,368 - Psyr_2325 0.70 +0.3
2,703,368 - Psyr_2325 0.70 -0.2
2,703,394 + Psyr_2325 0.75 +1.8
2,703,394 + Psyr_2325 0.75 -0.1
2,703,394 + Psyr_2325 0.75 +1.0
2,703,395 - Psyr_2325 0.75 +0.9
2,703,395 - Psyr_2325 0.75 -0.9
2,703,395 - Psyr_2325 0.75 +0.5
2,703,395 - Psyr_2325 0.75 +0.8
2,703,395 - Psyr_2325 0.75 -0.4
2,703,395 - Psyr_2325 0.75 +0.0
2,703,395 - Psyr_2325 0.75 -1.2
2,703,395 - Psyr_2325 0.75 +0.8
2,703,395 - Psyr_2325 0.75 +0.2
2,703,583 + +0.8
2,703,583 + +0.2
2,703,584 - -1.1
2,703,584 - -1.5
2,703,584 - -1.5
2,703,654 + Psyr_2326 0.21 -0.6
2,703,654 + Psyr_2326 0.21 -0.4
2,703,655 - Psyr_2326 0.21 -0.2
2,703,655 - Psyr_2326 0.21 -1.5
2,703,722 + Psyr_2326 0.34 -0.7
2,703,722 + Psyr_2326 0.34 +1.4
2,703,723 - Psyr_2326 0.34 -1.7
2,703,879 + Psyr_2326 0.63 -1.4
2,703,915 + Psyr_2326 0.70 +0.4
2,703,915 + Psyr_2326 0.70 -1.9
2,703,915 + Psyr_2326 0.70 -0.0
2,703,915 + Psyr_2326 0.70 +0.8
2,703,915 + Psyr_2326 0.70 +0.4
2,703,915 + Psyr_2326 0.70 -0.5
2,703,915 + Psyr_2326 0.70 +0.4
2,703,915 + Psyr_2326 0.70 +1.5
2,703,915 + Psyr_2326 0.70 -1.0
2,703,915 + Psyr_2326 0.70 +0.4
2,703,915 + Psyr_2326 0.70 +1.8
2,703,916 - Psyr_2326 0.70 -1.5
2,703,916 - Psyr_2326 0.70 +0.1
2,703,916 - Psyr_2326 0.70 -1.2
2,703,916 - Psyr_2326 0.70 -0.1
2,703,916 - Psyr_2326 0.70 -0.8
2,703,916 - Psyr_2326 0.70 +0.1
2,703,916 - Psyr_2326 0.70 -2.2
2,703,916 - Psyr_2326 0.70 -2.4
2,703,916 - Psyr_2326 0.70 -1.5
2,703,916 - Psyr_2326 0.70 -1.5
2,703,975 + Psyr_2326 0.81 +0.1
2,703,975 + Psyr_2326 0.81 +0.4
2,703,976 - Psyr_2326 0.81 -0.9
2,704,074 + +1.1
2,704,075 - +0.5
2,704,075 - -0.9
2,704,088 + +0.2
2,704,130 + -0.8
2,704,130 + +0.1
2,704,130 + -1.4
2,704,349 + Psyr_2327 0.23 -1.4
2,704,350 - Psyr_2327 0.23 -0.2
2,704,492 + Psyr_2327 0.38 -1.2
2,704,492 + Psyr_2327 0.38 -0.5
2,704,686 + Psyr_2327 0.57 -0.5
2,704,687 - Psyr_2327 0.57 -1.4
2,704,687 - Psyr_2327 0.57 +0.4
2,704,891 - Psyr_2327 0.78 -0.2
2,704,891 - Psyr_2327 0.78 -2.2
2,705,023 + +0.4
2,705,023 + +0.6
2,705,024 - +1.1
2,705,078 + +0.6
2,705,078 + -1.8
2,705,079 - +0.2
2,705,079 - +0.8
2,705,079 - -2.0
2,705,079 - +0.4
2,705,079 - -1.0
2,705,079 - +0.5
2,705,124 + +0.8
2,705,125 - -1.0
2,705,125 - -0.9
2,705,125 - -1.2
2,705,125 - +0.8
2,705,128 + +1.1
2,705,128 + +2.4
2,705,129 - -0.2
2,705,143 + +0.5
2,705,143 + +0.2
2,705,144 - -1.1
2,705,144 - +0.1
2,705,144 - -0.1
2,705,171 - +0.8
2,705,251 + -0.0
2,705,251 + -1.2
2,705,251 + +0.1
2,705,251 + -1.2
2,705,251 + -0.3
2,705,251 + +0.5
2,705,252 - -0.4
2,705,252 - -0.0
2,705,252 - -1.0
2,705,335 + -1.4
2,705,335 + +0.1
2,705,539 + Psyr_2328 0.12 -0.8
2,705,540 - Psyr_2328 0.12 -0.8
2,705,542 + Psyr_2328 0.12 +0.8
2,705,542 + Psyr_2328 0.12 -1.1
2,705,543 - Psyr_2328 0.12 -1.0
2,705,692 + Psyr_2328 0.23 +0.4
2,705,692 + Psyr_2328 0.23 -0.8
2,705,693 - Psyr_2328 0.23 -0.6
2,705,693 - Psyr_2328 0.23 +0.4
2,705,693 - Psyr_2328 0.23 +0.3
2,705,858 + Psyr_2328 0.36 +0.0
2,705,858 + Psyr_2328 0.36 -0.4
2,705,858 + Psyr_2328 0.36 +0.5
2,705,858 + Psyr_2328 0.36 +1.8
2,705,858 + Psyr_2328 0.36 -0.2
2,705,859 - Psyr_2328 0.36 +0.1
2,705,916 + Psyr_2328 0.40 +0.2
2,705,916 + Psyr_2328 0.40 -0.0
2,705,916 + Psyr_2328 0.40 +1.4
2,705,916 + Psyr_2328 0.40 +1.0
2,705,916 + Psyr_2328 0.40 -0.0
2,705,917 - Psyr_2328 0.40 -0.4
2,705,917 - Psyr_2328 0.40 -2.0
2,705,917 - Psyr_2328 0.40 -0.6
2,705,917 - Psyr_2328 0.40 +0.2
2,705,991 + Psyr_2328 0.45 -0.2
2,705,991 + Psyr_2328 0.45 -1.4
2,705,992 - Psyr_2328 0.46 +0.4
2,705,995 + Psyr_2328 0.46 +0.1
2,705,995 + Psyr_2328 0.46 +0.8
2,705,996 - Psyr_2328 0.46 -1.5
2,705,996 - Psyr_2328 0.46 -0.6

Or see this region's nucleotide sequence