Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1744 and Psyr_1745 are separated by 85 nucleotides Psyr_1745 and Psyr_1746 are separated by 78 nucleotides Psyr_1746 and Psyr_1747 are separated by 91 nucleotides Psyr_1747 and Psyr_1748 are separated by 106 nucleotides
Psyr_1744: Psyr_1744 - lipoprotein, putative, at 1,981,895 to 1,982,386
_1744
Psyr_1745: Psyr_1745 - hypothetical protein, at 1,982,472 to 1,983,302
_1745
Psyr_1746: Psyr_1746 - Trigger factor, at 1,983,381 to 1,984,691
_1746
Psyr_1747: Psyr_1747 - ATP-dependent Clp protease proteolytic subunit ClpP, at 1,984,783 to 1,985,424
_1747
Psyr_1748: Psyr_1748 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,985,531 to 1,986,814
_1748
Position (kb) 1983
1984
1985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1982.382 kb on + strand at 1982.382 kb on + strand at 1982.382 kb on + strand at 1982.382 kb on + strand at 1982.383 kb on - strand at 1982.433 kb on + strand at 1982.475 kb on + strand at 1982.476 kb on - strand at 1982.529 kb on + strand at 1982.529 kb on + strand at 1982.530 kb on - strand at 1982.530 kb on - strand at 1982.530 kb on - strand at 1982.544 kb on - strand at 1982.551 kb on + strand at 1982.551 kb on + strand at 1982.551 kb on + strand at 1982.552 kb on - strand at 1982.611 kb on + strand, within Psyr_1745 at 1982.694 kb on - strand, within Psyr_1745 at 1982.766 kb on - strand, within Psyr_1745 at 1982.796 kb on + strand, within Psyr_1745 at 1982.796 kb on + strand, within Psyr_1745 at 1982.796 kb on + strand, within Psyr_1745 at 1982.797 kb on - strand, within Psyr_1745 at 1982.865 kb on - strand, within Psyr_1745 at 1982.919 kb on + strand, within Psyr_1745 at 1982.919 kb on + strand, within Psyr_1745 at 1982.919 kb on + strand, within Psyr_1745 at 1982.920 kb on - strand, within Psyr_1745 at 1982.920 kb on - strand, within Psyr_1745 at 1982.920 kb on - strand, within Psyr_1745 at 1982.920 kb on - strand, within Psyr_1745 at 1982.920 kb on - strand, within Psyr_1745 at 1982.994 kb on + strand, within Psyr_1745 at 1982.994 kb on + strand, within Psyr_1745 at 1982.995 kb on - strand, within Psyr_1745 at 1982.995 kb on - strand, within Psyr_1745 at 1983.085 kb on - strand, within Psyr_1745 at 1983.186 kb on + strand, within Psyr_1745 at 1983.186 kb on + strand, within Psyr_1745 at 1983.186 kb on + strand, within Psyr_1745 at 1983.186 kb on + strand, within Psyr_1745 at 1983.187 kb on - strand, within Psyr_1745 at 1983.187 kb on - strand, within Psyr_1745 at 1983.187 kb on - strand, within Psyr_1745 at 1983.188 kb on + strand, within Psyr_1745 at 1983.188 kb on + strand, within Psyr_1745 at 1983.188 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.190 kb on + strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.191 kb on - strand, within Psyr_1745 at 1983.266 kb on + strand at 1983.268 kb on + strand at 1983.269 kb on - strand at 1983.269 kb on - strand at 1983.287 kb on + strand at 1983.304 kb on + strand at 1983.304 kb on + strand at 1983.304 kb on + strand at 1983.314 kb on + strand at 1983.314 kb on + strand at 1983.314 kb on + strand at 1983.314 kb on + strand at 1983.315 kb on - strand at 1983.315 kb on - strand at 1983.436 kb on + strand at 1983.436 kb on + strand at 1983.437 kb on - strand at 1983.599 kb on + strand, within Psyr_1746 at 1983.599 kb on + strand, within Psyr_1746 at 1983.606 kb on + strand, within Psyr_1746 at 1983.607 kb on - strand, within Psyr_1746 at 1983.607 kb on - strand, within Psyr_1746 at 1983.656 kb on - strand, within Psyr_1746 at 1983.693 kb on + strand, within Psyr_1746 at 1983.694 kb on - strand, within Psyr_1746 at 1983.694 kb on - strand, within Psyr_1746 at 1983.702 kb on - strand, within Psyr_1746 at 1983.712 kb on + strand, within Psyr_1746 at 1984.041 kb on + strand, within Psyr_1746 at 1984.532 kb on - strand, within Psyr_1746 at 1984.542 kb on + strand, within Psyr_1746 at 1984.542 kb on + strand, within Psyr_1746 at 1984.542 kb on + strand, within Psyr_1746 at 1984.542 kb on + strand, within Psyr_1746 at 1984.570 kb on + strand at 1984.570 kb on + strand at 1984.570 kb on + strand at 1984.570 kb on + strand at 1984.571 kb on - strand at 1984.600 kb on + strand at 1984.600 kb on + strand at 1984.600 kb on + strand at 1984.600 kb on + strand at 1984.600 kb on + strand at 1984.604 kb on + strand at 1984.604 kb on + strand at 1984.604 kb on + strand at 1984.604 kb on + strand at 1984.647 kb on + strand at 1984.761 kb on + strand at 1984.762 kb on - strand at 1984.799 kb on - strand at 1984.882 kb on + strand, within Psyr_1747 at 1984.891 kb on + strand, within Psyr_1747 at 1984.892 kb on - strand, within Psyr_1747 at 1984.945 kb on + strand, within Psyr_1747 at 1984.946 kb on - strand, within Psyr_1747 at 1984.946 kb on - strand, within Psyr_1747 at 1985.017 kb on + strand, within Psyr_1747 at 1985.017 kb on + strand, within Psyr_1747 at 1985.017 kb on + strand, within Psyr_1747 at 1985.018 kb on - strand, within Psyr_1747 at 1985.018 kb on - strand, within Psyr_1747 at 1985.018 kb on - strand, within Psyr_1747 at 1985.018 kb on - strand, within Psyr_1747 at 1985.018 kb on - strand, within Psyr_1747 at 1985.423 kb on - strand at 1985.423 kb on - strand at 1985.573 kb on + strand at 1985.573 kb on + strand at 1985.574 kb on - strand at 1985.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 1,982,382 + -1.8 1,982,382 + -0.1 1,982,382 + -0.0 1,982,382 + -1.7 1,982,383 - -0.5 1,982,433 + +0.9 1,982,475 + -0.7 1,982,476 - -1.9 1,982,529 + +0.0 1,982,529 + +1.5 1,982,530 - +0.5 1,982,530 - -0.0 1,982,530 - -0.1 1,982,544 - -2.1 1,982,551 + +0.6 1,982,551 + -0.1 1,982,551 + +0.9 1,982,552 - +0.6 1,982,611 + Psyr_1745 0.17 +0.1 1,982,694 - Psyr_1745 0.27 +0.4 1,982,766 - Psyr_1745 0.35 +0.3 1,982,796 + Psyr_1745 0.39 -0.7 1,982,796 + Psyr_1745 0.39 -0.3 1,982,796 + Psyr_1745 0.39 +0.6 1,982,797 - Psyr_1745 0.39 +0.4 1,982,865 - Psyr_1745 0.47 +0.1 1,982,919 + Psyr_1745 0.54 -0.3 1,982,919 + Psyr_1745 0.54 -1.6 1,982,919 + Psyr_1745 0.54 -0.9 1,982,920 - Psyr_1745 0.54 -0.4 1,982,920 - Psyr_1745 0.54 +0.1 1,982,920 - Psyr_1745 0.54 -0.4 1,982,920 - Psyr_1745 0.54 -0.4 1,982,920 - Psyr_1745 0.54 -0.9 1,982,994 + Psyr_1745 0.63 -1.7 1,982,994 + Psyr_1745 0.63 -0.3 1,982,995 - Psyr_1745 0.63 +0.3 1,982,995 - Psyr_1745 0.63 +0.5 1,983,085 - Psyr_1745 0.74 -0.2 1,983,186 + Psyr_1745 0.86 +1.1 1,983,186 + Psyr_1745 0.86 +1.0 1,983,186 + Psyr_1745 0.86 -0.1 1,983,186 + Psyr_1745 0.86 -0.3 1,983,187 - Psyr_1745 0.86 +0.9 1,983,187 - Psyr_1745 0.86 +0.9 1,983,187 - Psyr_1745 0.86 +0.9 1,983,188 + Psyr_1745 0.86 -2.6 1,983,188 + Psyr_1745 0.86 +0.6 1,983,188 + Psyr_1745 0.86 -0.9 1,983,190 + Psyr_1745 0.86 -0.1 1,983,190 + Psyr_1745 0.86 +0.1 1,983,190 + Psyr_1745 0.86 +1.6 1,983,190 + Psyr_1745 0.86 +0.5 1,983,190 + Psyr_1745 0.86 -0.5 1,983,190 + Psyr_1745 0.86 +0.9 1,983,190 + Psyr_1745 0.86 +1.9 1,983,190 + Psyr_1745 0.86 -0.1 1,983,190 + Psyr_1745 0.86 +1.9 1,983,190 + Psyr_1745 0.86 +0.5 1,983,190 + Psyr_1745 0.86 +2.9 1,983,191 - Psyr_1745 0.87 -0.6 1,983,191 - Psyr_1745 0.87 -1.1 1,983,191 - Psyr_1745 0.87 +1.2 1,983,191 - Psyr_1745 0.87 +1.9 1,983,191 - Psyr_1745 0.87 -0.4 1,983,191 - Psyr_1745 0.87 -0.8 1,983,191 - Psyr_1745 0.87 +0.2 1,983,266 + +0.3 1,983,268 + +0.2 1,983,269 - +0.1 1,983,269 - +1.9 1,983,287 + -0.8 1,983,304 + -1.4 1,983,304 + -1.4 1,983,304 + +0.6 1,983,314 + -1.4 1,983,314 + +0.6 1,983,314 + -0.3 1,983,314 + -0.4 1,983,315 - -1.1 1,983,315 - -1.3 1,983,436 + -1.0 1,983,436 + -2.2 1,983,437 - -1.7 1,983,599 + Psyr_1746 0.17 -0.7 1,983,599 + Psyr_1746 0.17 +0.1 1,983,606 + Psyr_1746 0.17 -1.9 1,983,607 - Psyr_1746 0.17 -0.7 1,983,607 - Psyr_1746 0.17 -0.1 1,983,656 - Psyr_1746 0.21 +0.3 1,983,693 + Psyr_1746 0.24 -2.3 1,983,694 - Psyr_1746 0.24 -3.3 1,983,694 - Psyr_1746 0.24 -2.7 1,983,702 - Psyr_1746 0.24 -1.1 1,983,712 + Psyr_1746 0.25 +1.1 1,984,041 + Psyr_1746 0.50 +0.1 1,984,532 - Psyr_1746 0.88 -0.1 1,984,542 + Psyr_1746 0.89 +0.2 1,984,542 + Psyr_1746 0.89 -0.7 1,984,542 + Psyr_1746 0.89 -0.4 1,984,542 + Psyr_1746 0.89 -1.7 1,984,570 + -0.4 1,984,570 + -0.1 1,984,570 + -0.7 1,984,570 + -1.0 1,984,571 - +1.2 1,984,600 + +0.6 1,984,600 + -2.1 1,984,600 + +0.9 1,984,600 + +0.9 1,984,600 + +0.9 1,984,604 + -1.1 1,984,604 + -1.0 1,984,604 + +0.1 1,984,604 + -0.6 1,984,647 + +0.7 1,984,761 + +0.1 1,984,762 - -0.5 1,984,799 - +0.9 1,984,882 + Psyr_1747 0.15 -0.7 1,984,891 + Psyr_1747 0.17 -0.1 1,984,892 - Psyr_1747 0.17 -0.7 1,984,945 + Psyr_1747 0.25 -0.8 1,984,946 - Psyr_1747 0.25 -0.7 1,984,946 - Psyr_1747 0.25 +0.5 1,985,017 + Psyr_1747 0.36 -2.6 1,985,017 + Psyr_1747 0.36 +0.9 1,985,017 + Psyr_1747 0.36 -1.5 1,985,018 - Psyr_1747 0.37 -0.1 1,985,018 - Psyr_1747 0.37 +0.6 1,985,018 - Psyr_1747 0.37 +0.9 1,985,018 - Psyr_1747 0.37 -1.1 1,985,018 - Psyr_1747 0.37 +0.5 1,985,423 - -0.5 1,985,423 - -0.9 1,985,573 + -1.1 1,985,573 + -0.7 1,985,574 - -1.9 1,985,638 + -1.7
Or see this region's nucleotide sequence