Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1716

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1715 and Psyr_1716 are separated by 42 nucleotidesPsyr_1716 and Psyr_1717 overlap by 4 nucleotides Psyr_1715: Psyr_1715 - Exodeoxyribonuclease I subunit D, at 1,943,288 to 1,944,532 _1715 Psyr_1716: Psyr_1716 - conserved hypothetical protein, at 1,944,575 to 1,946,233 _1716 Psyr_1717: Psyr_1717 - TPR repeat:von Willebrand factor, type A, at 1,946,230 to 1,947,948 _1717 Position (kb) 1944 1945 1946 1947Strain fitness (log2 ratio) -1 0 1 2at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.865 kb on + strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1943.866 kb on - strand, within Psyr_1715at 1944.061 kb on - strand, within Psyr_1715at 1944.343 kb on - strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.407 kb on + strand, within Psyr_1715at 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.408 kb on - strandat 1944.539 kb on - strandat 1944.549 kb on - strandat 1944.550 kb on + strandat 1944.577 kb on - strandat 1944.577 kb on - strandat 1944.625 kb on + strandat 1944.625 kb on + strandat 1944.625 kb on + strandat 1944.625 kb on + strandat 1944.625 kb on + strandat 1944.626 kb on - strandat 1944.626 kb on - strandat 1944.699 kb on + strandat 1944.700 kb on - strandat 1945.360 kb on + strand, within Psyr_1716at 1945.399 kb on + strand, within Psyr_1716at 1945.587 kb on - strand, within Psyr_1716at 1945.595 kb on + strand, within Psyr_1716at 1945.614 kb on + strand, within Psyr_1716at 1945.614 kb on + strand, within Psyr_1716at 1945.761 kb on + strand, within Psyr_1716at 1945.797 kb on + strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1946.213 kb on + strandat 1946.220 kb on + strandat 1946.221 kb on - strandat 1946.221 kb on - strandat 1946.727 kb on - strand, within Psyr_1717at 1946.792 kb on + strand, within Psyr_1717at 1946.793 kb on - strand, within Psyr_1717at 1947.134 kb on + strand, within Psyr_1717

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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1,943,865 + Psyr_1715 0.46 +0.6
1,943,865 + Psyr_1715 0.46 +0.9
1,943,865 + Psyr_1715 0.46 -0.3
1,943,865 + Psyr_1715 0.46 -1.0
1,943,865 + Psyr_1715 0.46 +0.4
1,943,865 + Psyr_1715 0.46 -1.4
1,943,865 + Psyr_1715 0.46 -0.7
1,943,866 - Psyr_1715 0.46 +0.4
1,943,866 - Psyr_1715 0.46 +1.2
1,943,866 - Psyr_1715 0.46 +1.3
1,943,866 - Psyr_1715 0.46 -1.0
1,943,866 - Psyr_1715 0.46 +1.0
1,943,866 - Psyr_1715 0.46 +1.3
1,943,866 - Psyr_1715 0.46 -0.5
1,944,061 - Psyr_1715 0.62 +0.6
1,944,343 - Psyr_1715 0.85 -0.1
1,944,407 + Psyr_1715 0.90 -0.3
1,944,407 + Psyr_1715 0.90 -0.1
1,944,407 + Psyr_1715 0.90 +2.5
1,944,407 + Psyr_1715 0.90 +0.9
1,944,407 + Psyr_1715 0.90 +0.4
1,944,407 + Psyr_1715 0.90 -0.1
1,944,407 + Psyr_1715 0.90 -0.3
1,944,407 + Psyr_1715 0.90 -0.7
1,944,407 + Psyr_1715 0.90 -0.4
1,944,407 + Psyr_1715 0.90 -0.3
1,944,408 - +0.1
1,944,408 - +1.5
1,944,408 - +1.1
1,944,408 - -0.4
1,944,408 - -1.1
1,944,408 - +1.7
1,944,408 - -0.9
1,944,408 - +0.9
1,944,408 - +1.9
1,944,539 - +0.6
1,944,549 - +0.3
1,944,550 + -0.8
1,944,577 - +0.1
1,944,577 - -0.4
1,944,625 + -0.7
1,944,625 + +0.9
1,944,625 + -1.4
1,944,625 + -0.7
1,944,625 + -0.7
1,944,626 - +1.2
1,944,626 - +2.1
1,944,699 + -0.5
1,944,700 - -0.7
1,945,360 + Psyr_1716 0.47 -0.3
1,945,399 + Psyr_1716 0.50 -1.3
1,945,587 - Psyr_1716 0.61 -1.1
1,945,595 + Psyr_1716 0.61 -0.7
1,945,614 + Psyr_1716 0.63 -0.6
1,945,614 + Psyr_1716 0.63 +0.5
1,945,761 + Psyr_1716 0.71 -0.7
1,945,797 + Psyr_1716 0.74 -0.7
1,945,798 - Psyr_1716 0.74 -0.4
1,945,798 - Psyr_1716 0.74 -1.7
1,945,798 - Psyr_1716 0.74 -0.6
1,945,798 - Psyr_1716 0.74 +0.7
1,945,798 - Psyr_1716 0.74 -0.9
1,945,798 - Psyr_1716 0.74 +0.2
1,945,798 - Psyr_1716 0.74 -0.9
1,946,213 + -0.4
1,946,220 + +0.3
1,946,221 - +0.1
1,946,221 - +0.9
1,946,727 - Psyr_1717 0.29 -0.7
1,946,792 + Psyr_1717 0.33 +0.9
1,946,793 - Psyr_1717 0.33 -0.7
1,947,134 + Psyr_1717 0.53 -0.4

Or see this region's nucleotide sequence