Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1677 and Psyr_1678 are separated by 182 nucleotides Psyr_1678 and Psyr_1679 are separated by 139 nucleotides Psyr_1679 and Psyr_1680 are separated by 206 nucleotides
Psyr_1677: Psyr_1677 - General substrate transporter:Major facilitator superfamily, at 1,885,684 to 1,887,021
_1677
Psyr_1678: Psyr_1678 - Hypothetical protein, at 1,887,204 to 1,887,479
_1678
Psyr_1679: Psyr_1679 - Hypothetical protein, at 1,887,619 to 1,887,960
_1679
Psyr_1680: Psyr_1680 - Hypothetical protein, at 1,888,167 to 1,888,448
_1680
Position (kb) 1887
1888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1886.206 kb on + strand, within Psyr_1677 at 1886.302 kb on + strand, within Psyr_1677 at 1886.455 kb on + strand, within Psyr_1677 at 1886.455 kb on + strand, within Psyr_1677 at 1886.455 kb on + strand, within Psyr_1677 at 1886.455 kb on + strand, within Psyr_1677 at 1886.456 kb on - strand, within Psyr_1677 at 1886.456 kb on - strand, within Psyr_1677 at 1886.456 kb on - strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.470 kb on + strand, within Psyr_1677 at 1886.471 kb on - strand, within Psyr_1677 at 1886.471 kb on - strand, within Psyr_1677 at 1886.471 kb on - strand, within Psyr_1677 at 1886.471 kb on - strand, within Psyr_1677 at 1886.482 kb on + strand, within Psyr_1677 at 1886.483 kb on - strand, within Psyr_1677 at 1886.483 kb on - strand, within Psyr_1677 at 1886.741 kb on + strand, within Psyr_1677 at 1886.806 kb on + strand, within Psyr_1677 at 1886.806 kb on + strand, within Psyr_1677 at 1886.806 kb on + strand, within Psyr_1677 at 1886.806 kb on + strand, within Psyr_1677 at 1886.807 kb on - strand, within Psyr_1677 at 1886.807 kb on - strand, within Psyr_1677 at 1886.807 kb on - strand, within Psyr_1677 at 1886.807 kb on - strand, within Psyr_1677 at 1886.818 kb on + strand, within Psyr_1677 at 1886.819 kb on - strand, within Psyr_1677 at 1886.899 kb on + strand at 1886.899 kb on + strand at 1886.899 kb on + strand at 1886.900 kb on - strand at 1886.900 kb on - strand at 1886.900 kb on - strand at 1886.964 kb on - strand at 1886.978 kb on + strand at 1886.978 kb on + strand at 1886.978 kb on + strand at 1886.978 kb on + strand at 1886.978 kb on + strand at 1886.978 kb on + strand at 1886.979 kb on - strand at 1886.979 kb on - strand at 1886.979 kb on - strand at 1886.979 kb on - strand at 1886.979 kb on - strand at 1886.979 kb on - strand at 1886.985 kb on + strand at 1887.385 kb on + strand, within Psyr_1678
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 1,886,206 + Psyr_1677 0.39 -0.5 1,886,302 + Psyr_1677 0.46 -1.2 1,886,455 + Psyr_1677 0.58 +0.3 1,886,455 + Psyr_1677 0.58 -0.1 1,886,455 + Psyr_1677 0.58 -0.4 1,886,455 + Psyr_1677 0.58 -0.0 1,886,456 - Psyr_1677 0.58 -1.4 1,886,456 - Psyr_1677 0.58 +0.6 1,886,456 - Psyr_1677 0.58 +0.3 1,886,470 + Psyr_1677 0.59 -0.7 1,886,470 + Psyr_1677 0.59 -0.1 1,886,470 + Psyr_1677 0.59 -0.9 1,886,470 + Psyr_1677 0.59 -1.7 1,886,470 + Psyr_1677 0.59 +0.2 1,886,470 + Psyr_1677 0.59 +1.6 1,886,470 + Psyr_1677 0.59 -0.5 1,886,471 - Psyr_1677 0.59 +2.1 1,886,471 - Psyr_1677 0.59 -0.1 1,886,471 - Psyr_1677 0.59 -0.4 1,886,471 - Psyr_1677 0.59 +0.9 1,886,482 + Psyr_1677 0.60 +0.9 1,886,483 - Psyr_1677 0.60 -0.6 1,886,483 - Psyr_1677 0.60 +0.9 1,886,741 + Psyr_1677 0.79 -1.3 1,886,806 + Psyr_1677 0.84 +1.7 1,886,806 + Psyr_1677 0.84 +1.4 1,886,806 + Psyr_1677 0.84 +1.3 1,886,806 + Psyr_1677 0.84 -1.9 1,886,807 - Psyr_1677 0.84 +0.9 1,886,807 - Psyr_1677 0.84 -1.1 1,886,807 - Psyr_1677 0.84 +0.2 1,886,807 - Psyr_1677 0.84 -0.7 1,886,818 + Psyr_1677 0.85 +0.9 1,886,819 - Psyr_1677 0.85 -1.0 1,886,899 + -2.1 1,886,899 + -1.3 1,886,899 + +1.2 1,886,900 - +0.9 1,886,900 - -0.4 1,886,900 - -0.1 1,886,964 - -1.1 1,886,978 + -0.4 1,886,978 + +1.3 1,886,978 + +0.6 1,886,978 + +1.9 1,886,978 + +0.7 1,886,978 + -0.2 1,886,979 - +1.1 1,886,979 - +0.2 1,886,979 - -1.4 1,886,979 - +1.2 1,886,979 - -0.1 1,886,979 - +0.2 1,886,985 + +0.4 1,887,385 + Psyr_1678 0.66 -0.8
Or see this region's nucleotide sequence