Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1598

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1595 and Psyr_1596 are separated by 100 nucleotidesPsyr_1596 and Psyr_1597 are separated by 2 nucleotidesPsyr_1597 and Psyr_1598 are separated by 17 nucleotidesPsyr_1598 and Psyr_1599 are separated by 117 nucleotides Psyr_1595: Psyr_1595 - Protein of unknown function DUF1232, at 1,794,461 to 1,794,913 _1595 Psyr_1596: Psyr_1596 - Helix-turn-helix motif protein, at 1,795,014 to 1,795,352 _1596 Psyr_1597: Psyr_1597 - conserved hypothetical protein, at 1,795,355 to 1,795,726 _1597 Psyr_1598: Psyr_1598 - diguanylate cyclase/phosphodiesterase, at 1,795,744 to 1,797,516 _1598 Psyr_1599: Psyr_1599 - C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A, at 1,797,634 to 1,799,748 _1599 Position (kb) 1795 1796 1797 1798Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.952 kb on + strandat 1794.953 kb on - strandat 1794.965 kb on + strandat 1794.998 kb on - strandat 1794.998 kb on - strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.053 kb on + strand, within Psyr_1596at 1795.077 kb on + strand, within Psyr_1596at 1795.077 kb on + strand, within Psyr_1596at 1795.078 kb on - strand, within Psyr_1596at 1795.433 kb on + strand, within Psyr_1597at 1795.691 kb on + strandat 1795.691 kb on + strandat 1795.691 kb on + strandat 1795.692 kb on - strandat 1795.692 kb on - strandat 1795.692 kb on - strandat 1795.692 kb on - strandat 1795.692 kb on - strandat 1796.172 kb on - strand, within Psyr_1598at 1796.177 kb on + strand, within Psyr_1598at 1796.177 kb on + strand, within Psyr_1598at 1796.178 kb on - strand, within Psyr_1598at 1796.178 kb on - strand, within Psyr_1598at 1796.178 kb on - strand, within Psyr_1598at 1796.178 kb on - strand, within Psyr_1598at 1796.216 kb on + strand, within Psyr_1598at 1796.217 kb on - strand, within Psyr_1598at 1796.309 kb on + strand, within Psyr_1598at 1796.379 kb on - strand, within Psyr_1598at 1796.379 kb on - strand, within Psyr_1598at 1796.379 kb on - strand, within Psyr_1598at 1796.817 kb on - strand, within Psyr_1598at 1796.817 kb on - strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.834 kb on - strand, within Psyr_1598at 1796.997 kb on - strand, within Psyr_1598at 1796.997 kb on - strand, within Psyr_1598at 1797.083 kb on + strand, within Psyr_1598at 1797.101 kb on + strand, within Psyr_1598at 1797.102 kb on - strand, within Psyr_1598at 1797.102 kb on - strand, within Psyr_1598at 1797.508 kb on + strandat 1797.508 kb on + strandat 1797.509 kb on - strandat 1797.509 kb on - strandat 1797.610 kb on + strandat 1797.611 kb on - strandat 1797.636 kb on - strandat 1797.668 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1798.100 kb on + strand, within Psyr_1599at 1798.100 kb on + strand, within Psyr_1599at 1798.114 kb on + strand, within Psyr_1599at 1798.114 kb on + strand, within Psyr_1599at 1798.117 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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1,794,911 + +0.1
1,794,911 + -0.0
1,794,911 + -0.9
1,794,911 + +1.0
1,794,911 + +0.4
1,794,911 + -2.0
1,794,911 + -0.7
1,794,911 + -1.0
1,794,911 + -0.2
1,794,911 + +0.6
1,794,911 + -0.3
1,794,911 + +1.0
1,794,912 - +0.5
1,794,912 - +0.2
1,794,912 - +1.0
1,794,912 - -0.4
1,794,912 - +0.3
1,794,912 - +0.4
1,794,912 - -0.5
1,794,912 - +1.0
1,794,952 + +0.6
1,794,953 - -1.9
1,794,965 + +0.1
1,794,998 - -0.6
1,794,998 - -0.2
1,795,000 + -0.3
1,795,000 + +0.6
1,795,000 + +0.1
1,795,000 + +1.0
1,795,000 + +1.0
1,795,000 + -0.8
1,795,001 - -0.4
1,795,001 - -1.9
1,795,001 - +2.4
1,795,001 - +0.1
1,795,001 - -0.0
1,795,053 + Psyr_1596 0.12 +3.0
1,795,077 + Psyr_1596 0.19 -0.5
1,795,077 + Psyr_1596 0.19 +1.4
1,795,078 - Psyr_1596 0.19 +1.2
1,795,433 + Psyr_1597 0.21 -0.6
1,795,691 + -1.6
1,795,691 + -0.0
1,795,691 + -0.7
1,795,692 - +2.8
1,795,692 - +1.0
1,795,692 - -1.2
1,795,692 - +1.2
1,795,692 - -0.5
1,796,172 - Psyr_1598 0.24 -0.0
1,796,177 + Psyr_1598 0.24 -1.2
1,796,177 + Psyr_1598 0.24 +0.3
1,796,178 - Psyr_1598 0.24 +0.7
1,796,178 - Psyr_1598 0.24 +0.2
1,796,178 - Psyr_1598 0.24 +0.4
1,796,178 - Psyr_1598 0.24 +0.5
1,796,216 + Psyr_1598 0.27 -0.5
1,796,217 - Psyr_1598 0.27 +0.1
1,796,309 + Psyr_1598 0.32 +0.5
1,796,379 - Psyr_1598 0.36 -0.4
1,796,379 - Psyr_1598 0.36 +1.1
1,796,379 - Psyr_1598 0.36 +1.0
1,796,817 - Psyr_1598 0.61 +0.6
1,796,817 - Psyr_1598 0.61 +0.3
1,796,833 + Psyr_1598 0.61 +1.3
1,796,833 + Psyr_1598 0.61 +0.6
1,796,833 + Psyr_1598 0.61 +0.3
1,796,834 - Psyr_1598 0.61 +0.4
1,796,997 - Psyr_1598 0.71 +0.3
1,796,997 - Psyr_1598 0.71 -0.0
1,797,083 + Psyr_1598 0.76 -0.9
1,797,101 + Psyr_1598 0.77 -0.6
1,797,102 - Psyr_1598 0.77 -1.0
1,797,102 - Psyr_1598 0.77 +1.0
1,797,508 + -0.0
1,797,508 + -1.2
1,797,509 - -0.6
1,797,509 - -1.2
1,797,610 + +1.4
1,797,611 - -0.6
1,797,636 - -1.0
1,797,668 + -2.3
1,797,701 + -0.6
1,797,701 + -0.0
1,797,701 + -0.6
1,797,701 + -1.0
1,798,100 + Psyr_1599 0.22 -0.0
1,798,100 + Psyr_1599 0.22 -0.0
1,798,114 + Psyr_1599 0.23 -1.0
1,798,114 + Psyr_1599 0.23 -0.8
1,798,117 + Psyr_1599 0.23 -2.5
1,798,337 + Psyr_1599 0.33 -1.2
1,798,337 + Psyr_1599 0.33 -0.4
1,798,337 + Psyr_1599 0.33 -0.6
1,798,337 + Psyr_1599 0.33 -3.0
1,798,338 - Psyr_1599 0.33 -1.0
1,798,338 - Psyr_1599 0.33 -1.6
1,798,338 - Psyr_1599 0.33 -1.1
1,798,338 - Psyr_1599 0.33 -1.3

Or see this region's nucleotide sequence