Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1584

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1583 and Psyr_1584 are separated by 175 nucleotidesPsyr_1584 and Psyr_1585 are separated by 69 nucleotides Psyr_1583: Psyr_1583 - cysteine synthase, at 1,777,829 to 1,778,803 _1583 Psyr_1584: Psyr_1584 - Aspartyl/Asparaginyl beta-hydroxylase, at 1,778,979 to 1,779,917 _1584 Psyr_1585: Psyr_1585 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 1,779,987 to 1,783,463 _1585 Position (kb) 1778 1779 1780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1778.090 kb on + strand, within Psyr_1583at 1778.090 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.246 kb on + strand, within Psyr_1583at 1778.342 kb on + strand, within Psyr_1583at 1778.377 kb on + strand, within Psyr_1583at 1778.377 kb on + strand, within Psyr_1583at 1778.396 kb on + strand, within Psyr_1583at 1778.396 kb on + strand, within Psyr_1583at 1778.397 kb on - strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.747 kb on + strandat 1778.747 kb on + strandat 1778.748 kb on - strandat 1778.848 kb on + strandat 1778.848 kb on + strandat 1778.848 kb on + strandat 1778.910 kb on - strandat 1779.039 kb on + strandat 1779.039 kb on + strandat 1779.039 kb on + strandat 1779.040 kb on - strandat 1779.040 kb on - strandat 1779.114 kb on + strand, within Psyr_1584at 1779.115 kb on - strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.130 kb on - strand, within Psyr_1584at 1779.160 kb on - strand, within Psyr_1584at 1779.160 kb on - strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.254 kb on + strand, within Psyr_1584at 1779.254 kb on + strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.552 kb on + strand, within Psyr_1584at 1779.553 kb on - strand, within Psyr_1584at 1779.553 kb on - strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.595 kb on - strand, within Psyr_1584at 1779.774 kb on + strand, within Psyr_1584at 1779.774 kb on + strand, within Psyr_1584at 1779.775 kb on - strand, within Psyr_1584at 1779.775 kb on - strand, within Psyr_1584at 1779.936 kb on - strandat 1779.936 kb on - strandat 1780.057 kb on + strandat 1780.057 kb on + strandat 1780.058 kb on - strandat 1780.115 kb on + strandat 1780.116 kb on - strandat 1780.391 kb on + strand, within Psyr_1585at 1780.739 kb on + strand, within Psyr_1585at 1780.874 kb on + strand, within Psyr_1585

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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1,778,090 + Psyr_1583 0.27 +0.4
1,778,090 + Psyr_1583 0.27 +0.7
1,778,127 + Psyr_1583 0.31 -0.3
1,778,127 + Psyr_1583 0.31 +0.5
1,778,127 + Psyr_1583 0.31 +0.3
1,778,127 + Psyr_1583 0.31 +0.8
1,778,127 + Psyr_1583 0.31 -0.3
1,778,127 + Psyr_1583 0.31 -1.5
1,778,127 + Psyr_1583 0.31 +0.8
1,778,127 + Psyr_1583 0.31 +0.0
1,778,127 + Psyr_1583 0.31 -0.6
1,778,127 + Psyr_1583 0.31 -0.6
1,778,127 + Psyr_1583 0.31 -0.0
1,778,127 + Psyr_1583 0.31 -0.8
1,778,127 + Psyr_1583 0.31 -0.6
1,778,128 - Psyr_1583 0.31 -0.3
1,778,128 - Psyr_1583 0.31 +0.4
1,778,128 - Psyr_1583 0.31 -0.0
1,778,128 - Psyr_1583 0.31 -1.0
1,778,128 - Psyr_1583 0.31 +0.7
1,778,128 - Psyr_1583 0.31 +0.2
1,778,128 - Psyr_1583 0.31 -0.2
1,778,128 - Psyr_1583 0.31 -1.2
1,778,128 - Psyr_1583 0.31 -0.2
1,778,128 - Psyr_1583 0.31 -0.0
1,778,128 - Psyr_1583 0.31 -2.0
1,778,128 - Psyr_1583 0.31 +0.8
1,778,128 - Psyr_1583 0.31 +1.0
1,778,128 - Psyr_1583 0.31 -0.7
1,778,246 + Psyr_1583 0.43 -1.9
1,778,342 + Psyr_1583 0.53 -0.4
1,778,377 + Psyr_1583 0.56 +0.3
1,778,377 + Psyr_1583 0.56 -1.3
1,778,396 + Psyr_1583 0.58 -0.5
1,778,396 + Psyr_1583 0.58 +1.0
1,778,397 - Psyr_1583 0.58 -0.0
1,778,398 + Psyr_1583 0.58 +1.0
1,778,398 + Psyr_1583 0.58 +1.0
1,778,398 + Psyr_1583 0.58 +0.5
1,778,747 + -1.8
1,778,747 + +1.0
1,778,748 - +1.0
1,778,848 + +0.2
1,778,848 + -0.0
1,778,848 + -0.7
1,778,910 - -0.6
1,779,039 + -0.9
1,779,039 + +0.4
1,779,039 + -0.3
1,779,040 - +0.2
1,779,040 - -0.5
1,779,114 + Psyr_1584 0.14 +0.5
1,779,115 - Psyr_1584 0.14 +0.1
1,779,129 + Psyr_1584 0.16 -0.4
1,779,129 + Psyr_1584 0.16 -1.4
1,779,129 + Psyr_1584 0.16 -0.4
1,779,129 + Psyr_1584 0.16 -1.5
1,779,129 + Psyr_1584 0.16 -1.4
1,779,129 + Psyr_1584 0.16 -2.8
1,779,130 - Psyr_1584 0.16 -1.0
1,779,160 - Psyr_1584 0.19 -0.3
1,779,160 - Psyr_1584 0.19 -0.7
1,779,252 + Psyr_1584 0.29 -1.2
1,779,252 + Psyr_1584 0.29 -1.1
1,779,252 + Psyr_1584 0.29 -1.4
1,779,252 + Psyr_1584 0.29 +1.3
1,779,252 + Psyr_1584 0.29 -2.4
1,779,252 + Psyr_1584 0.29 -2.5
1,779,253 - Psyr_1584 0.29 -0.9
1,779,253 - Psyr_1584 0.29 -0.3
1,779,253 - Psyr_1584 0.29 +0.2
1,779,253 - Psyr_1584 0.29 +2.0
1,779,254 + Psyr_1584 0.29 +0.2
1,779,254 + Psyr_1584 0.29 -1.2
1,779,255 - Psyr_1584 0.29 -2.6
1,779,255 - Psyr_1584 0.29 -0.0
1,779,255 - Psyr_1584 0.29 +0.4
1,779,255 - Psyr_1584 0.29 -0.1
1,779,552 + Psyr_1584 0.61 +0.1
1,779,553 - Psyr_1584 0.61 -1.6
1,779,553 - Psyr_1584 0.61 +1.0
1,779,594 + Psyr_1584 0.65 -0.5
1,779,594 + Psyr_1584 0.65 -2.6
1,779,594 + Psyr_1584 0.65 -1.4
1,779,594 + Psyr_1584 0.65 -1.0
1,779,594 + Psyr_1584 0.65 -1.0
1,779,594 + Psyr_1584 0.65 +1.0
1,779,595 - Psyr_1584 0.66 +0.5
1,779,774 + Psyr_1584 0.85 +1.4
1,779,774 + Psyr_1584 0.85 +0.4
1,779,775 - Psyr_1584 0.85 +0.6
1,779,775 - Psyr_1584 0.85 -0.2
1,779,936 - +0.5
1,779,936 - +0.3
1,780,057 + -0.2
1,780,057 + +0.7
1,780,058 - -0.0
1,780,115 + -0.0
1,780,116 - -0.4
1,780,391 + Psyr_1585 0.12 -0.7
1,780,739 + Psyr_1585 0.22 -1.7
1,780,874 + Psyr_1585 0.26 -1.0

Or see this region's nucleotide sequence