Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1287

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1286 and Psyr_1287 are separated by 330 nucleotidesPsyr_1287 and Psyr_1288 are separated by 397 nucleotides Psyr_1286: Psyr_1286 - tyrosine recombinase XerD subunit, at 1,451,032 to 1,451,928 _1286 Psyr_1287: Psyr_1287 - hypothetical protein, at 1,452,259 to 1,452,657 _1287 Psyr_1288: Psyr_1288 - hypothetical protein, at 1,453,055 to 1,453,777 _1288 Position (kb) 1452 1453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1451.281 kb on + strand, within Psyr_1286at 1451.282 kb on - strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.608 kb on + strand, within Psyr_1286at 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.991 kb on + strandat 1451.992 kb on - strandat 1451.999 kb on + strandat 1451.999 kb on + strandat 1452.000 kb on - strandat 1452.000 kb on - strandat 1452.000 kb on - strandat 1452.020 kb on + strandat 1452.024 kb on + strandat 1452.024 kb on + strandat 1452.025 kb on - strandat 1452.025 kb on - strandat 1452.025 kb on - strandat 1452.051 kb on - strandat 1452.075 kb on - strandat 1452.254 kb on - strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.293 kb on + strandat 1452.293 kb on + strandat 1452.365 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.372 kb on - strand, within Psyr_1287at 1452.399 kb on + strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.532 kb on + strand, within Psyr_1287at 1452.629 kb on - strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.812 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.836 kb on - strandat 1452.836 kb on - strandat 1452.853 kb on - strandat 1452.853 kb on - strandat 1452.881 kb on - strandat 1452.972 kb on + strandat 1453.008 kb on - strandat 1453.008 kb on - strandat 1453.024 kb on + strandat 1453.135 kb on + strand, within Psyr_1288at 1453.136 kb on - strand, within Psyr_1288at 1453.235 kb on + strand, within Psyr_1288at 1453.235 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.244 kb on - strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.293 kb on - strand, within Psyr_1288at 1453.312 kb on + strand, within Psyr_1288at 1453.364 kb on - strand, within Psyr_1288at 1453.450 kb on - strand, within Psyr_1288at 1453.520 kb on - strand, within Psyr_1288at 1453.538 kb on + strand, within Psyr_1288at 1453.539 kb on - strand, within Psyr_1288at 1453.544 kb on + strand, within Psyr_1288at 1453.577 kb on - strand, within Psyr_1288at 1453.652 kb on + strand, within Psyr_1288

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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1,451,281 + Psyr_1286 0.28 -1.7
1,451,282 - Psyr_1286 0.28 +1.0
1,451,287 + Psyr_1286 0.28 +3.0
1,451,287 + Psyr_1286 0.28 -0.5
1,451,287 + Psyr_1286 0.28 -1.6
1,451,461 + Psyr_1286 0.48 +0.5
1,451,461 + Psyr_1286 0.48 +0.2
1,451,461 + Psyr_1286 0.48 +0.5
1,451,461 + Psyr_1286 0.48 -0.4
1,451,461 + Psyr_1286 0.48 -0.7
1,451,461 + Psyr_1286 0.48 -0.6
1,451,461 + Psyr_1286 0.48 +1.0
1,451,462 - Psyr_1286 0.48 -1.0
1,451,462 - Psyr_1286 0.48 -0.7
1,451,462 - Psyr_1286 0.48 +0.5
1,451,462 - Psyr_1286 0.48 +1.0
1,451,608 + Psyr_1286 0.64 -1.1
1,451,866 + -0.8
1,451,866 + +0.1
1,451,866 + -0.1
1,451,866 + -0.0
1,451,866 + -1.0
1,451,866 + +0.8
1,451,866 + +1.0
1,451,867 - +0.5
1,451,867 - -1.0
1,451,867 - +0.3
1,451,867 - +0.1
1,451,867 - +0.4
1,451,991 + -0.8
1,451,992 - +0.7
1,451,999 + -1.0
1,451,999 + -0.4
1,452,000 - +0.2
1,452,000 - -1.0
1,452,000 - +0.5
1,452,020 + -0.8
1,452,024 + -1.0
1,452,024 + -0.3
1,452,025 - +2.0
1,452,025 - +0.3
1,452,025 - -1.1
1,452,051 - -1.8
1,452,075 - +1.6
1,452,254 - -1.3
1,452,258 + -0.1
1,452,258 + -0.1
1,452,258 + +1.2
1,452,258 + +0.4
1,452,258 + +0.2
1,452,259 - -0.3
1,452,259 - +0.4
1,452,259 - -0.4
1,452,259 - -0.7
1,452,259 - +1.0
1,452,293 + -0.0
1,452,293 + -0.0
1,452,365 + Psyr_1287 0.27 +0.3
1,452,367 + Psyr_1287 0.27 -0.2
1,452,367 + Psyr_1287 0.27 +1.0
1,452,367 + Psyr_1287 0.27 -1.5
1,452,367 + Psyr_1287 0.27 +0.8
1,452,367 + Psyr_1287 0.27 -2.6
1,452,367 + Psyr_1287 0.27 -1.9
1,452,367 + Psyr_1287 0.27 -0.6
1,452,367 + Psyr_1287 0.27 +0.6
1,452,367 + Psyr_1287 0.27 -0.0
1,452,367 + Psyr_1287 0.27 -2.6
1,452,368 - Psyr_1287 0.27 +0.6
1,452,368 - Psyr_1287 0.27 -2.2
1,452,368 - Psyr_1287 0.27 -0.5
1,452,368 - Psyr_1287 0.27 -1.4
1,452,368 - Psyr_1287 0.27 -0.7
1,452,368 - Psyr_1287 0.27 -1.9
1,452,368 - Psyr_1287 0.27 -1.3
1,452,371 + Psyr_1287 0.28 -1.0
1,452,371 + Psyr_1287 0.28 -0.8
1,452,372 - Psyr_1287 0.28 -1.9
1,452,399 + Psyr_1287 0.35 +1.0
1,452,425 - Psyr_1287 0.42 +3.0
1,452,425 - Psyr_1287 0.42 -1.3
1,452,532 + Psyr_1287 0.68 +0.2
1,452,629 - +0.5
1,452,768 + +0.7
1,452,768 + -2.5
1,452,768 + +0.7
1,452,768 + +0.6
1,452,769 - -1.0
1,452,769 - +0.7
1,452,769 - +2.6
1,452,769 - -1.2
1,452,812 + +0.3
1,452,835 + -0.8
1,452,835 + -0.0
1,452,835 + -1.0
1,452,835 + -0.8
1,452,835 + +1.8
1,452,835 + -0.0
1,452,836 - -0.3
1,452,836 - -1.0
1,452,853 - +0.1
1,452,853 - +1.7
1,452,881 - -0.0
1,452,972 + +0.2
1,453,008 - -1.6
1,453,008 - -0.7
1,453,024 + -0.3
1,453,135 + Psyr_1288 0.11 +1.3
1,453,136 - Psyr_1288 0.11 +0.7
1,453,235 + Psyr_1288 0.25 -2.7
1,453,235 + Psyr_1288 0.25 +1.0
1,453,238 + Psyr_1288 0.25 -0.0
1,453,238 + Psyr_1288 0.25 -0.6
1,453,238 + Psyr_1288 0.25 -0.1
1,453,239 - Psyr_1288 0.25 +0.5
1,453,239 - Psyr_1288 0.25 -0.6
1,453,239 - Psyr_1288 0.25 -0.4
1,453,239 - Psyr_1288 0.25 -0.4
1,453,244 - Psyr_1288 0.26 -0.3
1,453,292 + Psyr_1288 0.33 +2.0
1,453,292 + Psyr_1288 0.33 -1.2
1,453,292 + Psyr_1288 0.33 -0.3
1,453,293 - Psyr_1288 0.33 +0.3
1,453,312 + Psyr_1288 0.36 +0.6
1,453,364 - Psyr_1288 0.43 -3.1
1,453,450 - Psyr_1288 0.55 +0.5
1,453,520 - Psyr_1288 0.64 +1.0
1,453,538 + Psyr_1288 0.67 +0.2
1,453,539 - Psyr_1288 0.67 -1.9
1,453,544 + Psyr_1288 0.68 -0.8
1,453,577 - Psyr_1288 0.72 -1.0
1,453,652 + Psyr_1288 0.83 +0.3

Or see this region's nucleotide sequence