Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1251
Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Erythromycin 25 ug/ml |
---|---|---|---|---|---|
remove | |||||
1,405,476 | + | Psyr_1249 | 0.77 | -0.0 | |
1,405,712 | + | +0.6 | |||
1,405,712 | + | +0.1 | |||
1,405,775 | + | +1.3 | |||
1,405,799 | + | -1.0 | |||
1,405,932 | + | Psyr_1250 | 0.20 | +0.1 | |
1,406,073 | + | Psyr_1250 | 0.42 | -1.8 | |
1,406,073 | + | Psyr_1250 | 0.42 | -1.0 | |
1,406,349 | + | Psyr_1250 | 0.85 | -1.0 | |
1,406,349 | + | Psyr_1250 | 0.85 | +0.7 | |
1,406,617 | + | Psyr_1251 | 0.15 | +1.0 | |
1,406,656 | + | Psyr_1251 | 0.18 | -0.8 | |
1,406,656 | + | Psyr_1251 | 0.18 | -0.8 | |
1,406,656 | + | Psyr_1251 | 0.18 | -1.8 | |
1,406,764 | + | Psyr_1251 | 0.27 | -2.6 | |
1,407,184 | + | Psyr_1251 | 0.64 | -1.3 | |
1,407,196 | + | Psyr_1251 | 0.65 | -0.0 | |
1,407,298 | + | Psyr_1251 | 0.74 | -2.2 | |
1,407,298 | + | Psyr_1251 | 0.74 | -0.3 | |
1,407,406 | + | Psyr_1251 | 0.84 | -0.6 | |
1,407,415 | + | Psyr_1251 | 0.84 | -3.0 | |
1,407,544 | + | -0.6 | |||
1,407,544 | + | +0.6 | |||
1,407,544 | + | +1.0 | |||
1,407,544 | + | -1.8 | |||
1,407,544 | + | -1.6 | |||
1,407,592 | + | +0.5 | |||
1,407,592 | + | -0.9 | |||
1,407,592 | + | -0.6 | |||
1,407,592 | + | -0.6 | |||
1,407,592 | + | -0.0 | |||
1,407,592 | + | +0.3 | |||
1,407,592 | + | +0.4 | |||
1,407,592 | + | +0.7 | |||
1,407,592 | + | -1.5 | |||
1,407,713 | + | +0.6 |
Or see this region's nucleotide sequence