Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0777

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0776 and Psyr_0777 are separated by 258 nucleotidesPsyr_0777 and Psyr_0778 are separated by 667 nucleotides Psyr_0776: Psyr_0776 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 880,439 to 881,383 _0776 Psyr_0777: Psyr_0777 - transcriptional regulator, LacI family, at 881,642 to 882,655 _0777 Psyr_0778: Psyr_0778 - type III effector HopAG1, at 883,323 to 885,473 _0778 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.959 kb on + strand, within Psyr_0776at 881.089 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strandat 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.395 kb on + strandat 881.542 kb on + strandat 881.542 kb on + strandat 881.542 kb on + strandat 881.625 kb on + strandat 881.625 kb on + strandat 881.625 kb on + strandat 881.626 kb on - strandat 881.626 kb on - strandat 881.661 kb on - strandat 881.661 kb on - strandat 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.788 kb on + strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.789 kb on - strand, within Psyr_0777at 881.817 kb on + strand, within Psyr_0777at 881.866 kb on + strand, within Psyr_0777at 881.955 kb on - strand, within Psyr_0777at 881.955 kb on - strand, within Psyr_0777at 882.010 kb on - strand, within Psyr_0777at 882.010 kb on - strand, within Psyr_0777at 882.064 kb on - strand, within Psyr_0777at 882.138 kb on + strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.139 kb on - strand, within Psyr_0777at 882.226 kb on + strand, within Psyr_0777at 882.226 kb on + strand, within Psyr_0777at 882.227 kb on - strand, within Psyr_0777at 882.376 kb on + strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.377 kb on - strand, within Psyr_0777at 882.378 kb on + strand, within Psyr_0777at 882.378 kb on + strandat 882.378 kb on + strand, within Psyr_0777at 882.378 kb on + strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777at 882.379 kb on - strand, within Psyr_0777at 882.541 kb on + strand, within Psyr_0777at 882.585 kb on + strandat 882.687 kb on + strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.688 kb on - strandat 882.855 kb on + strandat 882.855 kb on + strandat 882.856 kb on - strandat 882.861 kb on + strandat 882.862 kb on - strandat 882.862 kb on - strandat 882.865 kb on + strandat 882.865 kb on + strandat 882.865 kb on + strandat 882.865 kb on + strandat 882.869 kb on + strandat 882.869 kb on + strandat 882.869 kb on + strandat 882.874 kb on - strandat 882.883 kb on + strandat 882.883 kb on + strandat 882.884 kb on - strandat 882.906 kb on + strandat 882.907 kb on - strandat 882.945 kb on + strandat 882.945 kb on + strandat 882.945 kb on + strandat 882.945 kb on + strandat 882.946 kb on - strandat 882.946 kb on - strandat 882.946 kb on - strandat 882.946 kb on - strandat 882.955 kb on - strandat 883.001 kb on + strandat 883.002 kb on - strandat 883.002 kb on - strandat 883.002 kb on - strandat 883.002 kb on - strandat 883.002 kb on - strandat 883.009 kb on + strandat 883.010 kb on - strandat 883.093 kb on - strandat 883.138 kb on - strandat 883.140 kb on - strandat 883.150 kb on + strandat 883.250 kb on - strandat 883.309 kb on - strandat 883.309 kb on - strandat 883.340 kb on + strandat 883.341 kb on - strandat 883.370 kb on - strandat 883.448 kb on + strandat 883.448 kb on + strandat 883.508 kb on + strandat 883.508 kb on + strandat 883.508 kb on + strandat 883.509 kb on - strandat 883.597 kb on - strand, within Psyr_0778at 883.597 kb on - strand, within Psyr_0778

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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880,728 + Psyr_0776 0.31 +0.1
880,728 + Psyr_0776 0.31 -0.4
880,728 + Psyr_0776 0.31 +0.1
880,728 + Psyr_0776 0.31 +1.6
880,729 - Psyr_0776 0.31 -0.8
880,729 - Psyr_0776 0.31 +1.1
880,729 - Psyr_0776 0.31 +0.6
880,729 - Psyr_0776 0.31 +1.3
880,887 + Psyr_0776 0.47 -0.0
880,887 + Psyr_0776 0.47 -0.3
880,887 + Psyr_0776 0.47 +0.4
880,887 + Psyr_0776 0.47 -1.2
880,887 + Psyr_0776 0.47 -2.4
880,887 + Psyr_0776 0.47 -0.2
880,888 - Psyr_0776 0.48 +1.1
880,888 - Psyr_0776 0.48 +0.7
880,888 - Psyr_0776 0.48 +1.6
880,888 - Psyr_0776 0.48 +0.3
880,888 - Psyr_0776 0.48 -0.1
880,888 - Psyr_0776 0.48 -0.8
880,888 - Psyr_0776 0.48 +0.2
880,947 + Psyr_0776 0.54 -1.5
880,947 + Psyr_0776 0.54 -0.2
880,947 + Psyr_0776 0.54 +0.2
880,948 - Psyr_0776 0.54 -0.5
880,948 - Psyr_0776 0.54 +1.9
880,948 - Psyr_0776 0.54 -0.7
880,948 - Psyr_0776 0.54 -0.2
880,959 + Psyr_0776 0.55 -1.0
881,089 + Psyr_0776 0.69 +2.1
881,140 + Psyr_0776 0.74 -0.5
881,140 + Psyr_0776 0.74 -1.5
881,140 + Psyr_0776 0.74 +0.2
881,140 + Psyr_0776 0.74 +0.0
881,141 - Psyr_0776 0.74 -0.6
881,141 - Psyr_0776 0.74 -1.6
881,142 + Psyr_0776 0.74 -0.2
881,142 + Psyr_0776 0.74 +0.4
881,142 + Psyr_0776 0.74 -0.2
881,142 + Psyr_0776 0.74 -0.4
881,142 + Psyr_0776 0.74 -0.7
881,142 + Psyr_0776 0.74 -1.1
881,142 + Psyr_0776 0.74 -0.1
881,143 - Psyr_0776 0.74 -0.9
881,143 - +1.1
881,143 - Psyr_0776 0.74 -0.5
881,143 - Psyr_0776 0.74 -0.2
881,143 - Psyr_0776 0.74 -0.5
881,143 - Psyr_0776 0.74 -0.2
881,143 - Psyr_0776 0.74 +0.4
881,256 + Psyr_0776 0.86 +1.8
881,256 + Psyr_0776 0.86 +1.6
881,256 + Psyr_0776 0.86 +0.3
881,257 - Psyr_0776 0.87 -0.0
881,257 - Psyr_0776 0.87 +0.5
881,257 - Psyr_0776 0.87 -1.5
881,257 - Psyr_0776 0.87 +1.0
881,395 + -0.9
881,542 + +0.4
881,542 + -0.9
881,542 + +1.1
881,625 + +0.2
881,625 + -0.8
881,625 + +1.2
881,626 - +0.3
881,626 - -1.2
881,661 - -1.2
881,661 - -2.4
881,788 + Psyr_0777 0.14 +1.1
881,788 + Psyr_0777 0.14 +0.7
881,788 + Psyr_0777 0.14 +0.1
881,788 + Psyr_0777 0.14 -0.3
881,788 + Psyr_0777 0.14 -0.9
881,789 - Psyr_0777 0.14 -0.1
881,789 - Psyr_0777 0.14 -0.5
881,789 - Psyr_0777 0.14 +0.4
881,817 + Psyr_0777 0.17 -1.5
881,866 + Psyr_0777 0.22 -0.9
881,955 - Psyr_0777 0.31 +1.6
881,955 - Psyr_0777 0.31 -2.1
882,010 - Psyr_0777 0.36 +0.7
882,010 - Psyr_0777 0.36 -0.3
882,064 - Psyr_0777 0.42 -1.7
882,138 + Psyr_0777 0.49 -1.7
882,139 - Psyr_0777 0.49 -0.0
882,139 - Psyr_0777 0.49 -0.8
882,139 - Psyr_0777 0.49 -0.2
882,226 + Psyr_0777 0.58 -0.1
882,226 + Psyr_0777 0.58 -1.1
882,227 - Psyr_0777 0.58 +0.1
882,376 + Psyr_0777 0.72 -0.8
882,377 - Psyr_0777 0.72 -0.4
882,377 - Psyr_0777 0.72 -1.4
882,377 - Psyr_0777 0.72 -0.2
882,378 + Psyr_0777 0.73 -0.1
882,378 + +2.1
882,378 + Psyr_0777 0.73 -0.4
882,378 + Psyr_0777 0.73 +0.7
882,379 - Psyr_0777 0.73 -0.2
882,379 - Psyr_0777 0.73 -2.8
882,379 - Psyr_0777 0.73 -0.9
882,541 + Psyr_0777 0.89 -1.1
882,585 + -0.3
882,687 + -1.0
882,688 - +0.2
882,688 - -1.2
882,688 - -1.1
882,688 - +2.1
882,688 - +0.1
882,688 - +0.7
882,688 - -0.1
882,855 + -1.0
882,855 + -0.5
882,856 - -0.2
882,861 + -1.1
882,862 - +0.5
882,862 - +0.3
882,865 + +1.4
882,865 + -0.1
882,865 + +0.1
882,865 + -1.7
882,869 + -0.2
882,869 + -1.7
882,869 + -1.2
882,874 - -0.3
882,883 + +0.6
882,883 + +0.1
882,884 - -0.7
882,906 + -1.2
882,907 - -0.1
882,945 + -0.6
882,945 + -0.7
882,945 + -0.9
882,945 + -0.2
882,946 - -1.1
882,946 - +2.1
882,946 - -1.2
882,946 - -2.2
882,955 - -0.6
883,001 + -0.2
883,002 - +0.1
883,002 - -0.0
883,002 - -0.0
883,002 - -0.7
883,002 - -0.0
883,009 + +2.9
883,010 - +1.3
883,093 - -2.1
883,138 - +0.3
883,140 - +2.4
883,150 + -1.0
883,250 - -1.5
883,309 - -0.5
883,309 - +0.6
883,340 + -0.3
883,341 - +1.8
883,370 - -1.4
883,448 + -0.5
883,448 + +0.2
883,508 + +0.3
883,508 + -1.8
883,508 + +1.5
883,509 - +0.1
883,597 - Psyr_0778 0.13 -1.1
883,597 - Psyr_0778 0.13 -1.2

Or see this region's nucleotide sequence