Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0663

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0662 and Psyr_0663 are separated by 77 nucleotidesPsyr_0663 and Psyr_0664 are separated by 273 nucleotides Psyr_0662: Psyr_0662 - 2OG-Fe(II) oxygenase superfamily, at 750,397 to 751,362 _0662 Psyr_0663: Psyr_0663 - nucleoside-binding protein, at 751,440 to 752,534 _0663 Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599 _0664 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1 2at 750.740 kb on + strand, within Psyr_0662at 750.839 kb on - strand, within Psyr_0662at 750.839 kb on - strand, within Psyr_0662at 750.944 kb on + strand, within Psyr_0662at 750.944 kb on + strand, within Psyr_0662at 750.945 kb on - strand, within Psyr_0662at 750.945 kb on - strand, within Psyr_0662at 751.250 kb on + strand, within Psyr_0662at 751.250 kb on + strand, within Psyr_0662at 751.250 kb on + strand, within Psyr_0662at 751.250 kb on + strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.251 kb on - strand, within Psyr_0662at 751.325 kb on + strandat 751.441 kb on + strandat 751.441 kb on + strandat 751.441 kb on + strandat 751.442 kb on - strandat 751.442 kb on - strandat 751.442 kb on - strandat 751.442 kb on - strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.474 kb on + strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.475 kb on - strandat 751.477 kb on + strandat 751.477 kb on + strandat 751.477 kb on + strandat 751.477 kb on + strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.478 kb on - strandat 751.599 kb on + strand, within Psyr_0663at 751.735 kb on + strand, within Psyr_0663at 751.735 kb on + strand, within Psyr_0663at 751.735 kb on + strand, within Psyr_0663at 751.735 kb on + strand, within Psyr_0663at 751.736 kb on - strand, within Psyr_0663at 751.736 kb on - strand, within Psyr_0663at 751.736 kb on - strand, within Psyr_0663at 751.820 kb on - strand, within Psyr_0663at 751.820 kb on - strand, within Psyr_0663at 751.859 kb on + strand, within Psyr_0663at 751.876 kb on - strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 752.023 kb on - strand, within Psyr_0663at 752.051 kb on - strand, within Psyr_0663at 752.051 kb on - strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.090 kb on - strand, within Psyr_0663at 752.102 kb on - strand, within Psyr_0663at 752.102 kb on - strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.155 kb on + strand, within Psyr_0663at 752.252 kb on - strand, within Psyr_0663at 752.317 kb on + strand, within Psyr_0663at 752.317 kb on + strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.380 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.541 kb on + strandat 752.541 kb on + strandat 752.569 kb on + strandat 752.587 kb on - strandat 752.587 kb on - strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.632 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.639 kb on - strandat 752.650 kb on - strandat 752.679 kb on - strandat 752.679 kb on - strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 753.021 kb on - strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.102 kb on - strand, within Psyr_0664at 753.318 kb on + strand, within Psyr_0664

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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750,740 + Psyr_0662 0.36 -0.9
750,839 - Psyr_0662 0.46 +0.2
750,839 - Psyr_0662 0.46 -2.1
750,944 + Psyr_0662 0.57 +0.1
750,944 + Psyr_0662 0.57 -0.4
750,945 - Psyr_0662 0.57 -0.8
750,945 - Psyr_0662 0.57 +1.1
751,250 + Psyr_0662 0.88 -0.9
751,250 + Psyr_0662 0.88 -0.0
751,250 + Psyr_0662 0.88 -0.9
751,250 + Psyr_0662 0.88 -0.4
751,251 - Psyr_0662 0.88 +1.1
751,251 - Psyr_0662 0.88 -0.3
751,251 - Psyr_0662 0.88 -0.3
751,251 - Psyr_0662 0.88 -1.9
751,251 - Psyr_0662 0.88 -0.4
751,251 - Psyr_0662 0.88 -0.4
751,325 + +0.2
751,441 + -0.4
751,441 + -0.6
751,441 + +0.5
751,442 - +1.0
751,442 - -0.5
751,442 - +0.6
751,442 - -0.5
751,474 + +0.4
751,474 + +0.4
751,474 + +1.1
751,474 + +0.4
751,474 + +2.1
751,474 + -1.2
751,474 + +1.5
751,475 - -0.0
751,475 - -0.0
751,475 - -0.9
751,475 - +0.6
751,475 - +0.4
751,475 - -0.4
751,475 - -0.6
751,477 + -2.2
751,477 + +0.3
751,477 + -0.5
751,477 + +0.2
751,478 - -0.2
751,478 - -0.8
751,478 - +1.1
751,478 - +0.9
751,478 - -0.7
751,478 - -0.0
751,478 - +1.1
751,478 - +0.3
751,478 - +0.1
751,478 - -0.3
751,599 + Psyr_0663 0.15 +0.6
751,735 + Psyr_0663 0.27 +0.6
751,735 + Psyr_0663 0.27 -1.2
751,735 + Psyr_0663 0.27 +1.1
751,735 + Psyr_0663 0.27 -0.2
751,736 - Psyr_0663 0.27 +1.1
751,736 - Psyr_0663 0.27 +0.7
751,736 - Psyr_0663 0.27 -0.1
751,820 - Psyr_0663 0.35 +0.8
751,820 - Psyr_0663 0.35 -0.2
751,859 + Psyr_0663 0.38 +1.4
751,876 - Psyr_0663 0.40 -1.2
751,981 + Psyr_0663 0.49 -0.5
751,981 + Psyr_0663 0.49 -0.9
751,981 + Psyr_0663 0.49 +0.1
751,981 + Psyr_0663 0.49 -1.2
751,982 - Psyr_0663 0.49 -0.1
751,982 - Psyr_0663 0.49 -0.6
751,982 - Psyr_0663 0.49 -0.6
751,982 - Psyr_0663 0.49 -0.5
751,982 - Psyr_0663 0.49 +0.4
751,982 - Psyr_0663 0.49 +0.4
752,023 - Psyr_0663 0.53 +0.8
752,051 - Psyr_0663 0.56 +0.9
752,051 - Psyr_0663 0.56 +0.7
752,089 + Psyr_0663 0.59 +1.1
752,089 + Psyr_0663 0.59 -0.1
752,089 + Psyr_0663 0.59 +0.2
752,089 + Psyr_0663 0.59 +1.3
752,089 + Psyr_0663 0.59 -0.1
752,090 - Psyr_0663 0.59 +0.1
752,102 - Psyr_0663 0.60 +0.1
752,102 - Psyr_0663 0.60 +0.6
752,113 + Psyr_0663 0.61 +0.3
752,113 + Psyr_0663 0.61 +1.3
752,113 + Psyr_0663 0.61 +0.4
752,113 + Psyr_0663 0.61 -0.7
752,113 + Psyr_0663 0.61 +1.5
752,113 + Psyr_0663 0.61 +0.8
752,113 + Psyr_0663 0.61 -1.2
752,113 + Psyr_0663 0.61 +0.7
752,113 + Psyr_0663 0.61 -0.7
752,114 - Psyr_0663 0.62 +0.4
752,114 - Psyr_0663 0.62 -0.3
752,114 - Psyr_0663 0.62 -0.8
752,114 - Psyr_0663 0.62 -0.1
752,114 - Psyr_0663 0.62 -0.5
752,114 - Psyr_0663 0.62 +0.7
752,128 + Psyr_0663 0.63 +0.2
752,128 + Psyr_0663 0.63 -0.9
752,128 + Psyr_0663 0.63 -0.8
752,129 - Psyr_0663 0.63 -0.6
752,129 - Psyr_0663 0.63 -1.9
752,129 - Psyr_0663 0.63 -0.0
752,155 + Psyr_0663 0.65 +2.7
752,252 - Psyr_0663 0.74 -1.4
752,317 + Psyr_0663 0.80 +1.1
752,317 + Psyr_0663 0.80 -1.5
752,318 - Psyr_0663 0.80 +0.4
752,318 - Psyr_0663 0.80 +0.5
752,318 - Psyr_0663 0.80 +1.2
752,318 - Psyr_0663 0.80 +2.1
752,318 - Psyr_0663 0.80 -0.5
752,318 - Psyr_0663 0.80 -0.3
752,318 - Psyr_0663 0.80 +0.7
752,318 - Psyr_0663 0.80 +0.6
752,380 + Psyr_0663 0.86 -0.2
752,413 + Psyr_0663 0.89 -0.5
752,413 + Psyr_0663 0.89 -0.7
752,413 + Psyr_0663 0.89 +0.9
752,541 + +0.5
752,541 + -0.7
752,569 + -1.2
752,587 - -0.2
752,587 - +1.7
752,607 + +0.2
752,607 + +0.0
752,607 + -0.9
752,607 + +1.1
752,607 + -0.7
752,608 - -1.7
752,608 - +0.4
752,608 - -0.2
752,632 + -0.1
752,638 + +0.3
752,638 + -0.9
752,638 + -2.4
752,638 + +0.8
752,639 - +1.1
752,650 - -0.4
752,679 - +0.4
752,679 - +0.2
752,761 + -0.9
752,761 + +0.1
752,761 + +0.4
752,761 + -0.4
752,762 - +0.5
752,762 - +0.3
752,762 - -0.5
752,762 - -0.4
752,762 - -0.6
752,886 + +0.0
752,886 + +0.2
752,886 + +0.4
752,886 + +0.4
752,886 + +1.4
752,887 - -0.8
752,887 - -0.8
752,887 - -0.7
752,887 - -0.3
753,021 - Psyr_0664 0.27 +0.4
753,094 + Psyr_0664 0.36 +0.2
753,094 + Psyr_0664 0.36 +0.6
753,095 - Psyr_0664 0.36 -0.9
753,095 - Psyr_0664 0.36 +0.3
753,095 - Psyr_0664 0.36 +0.1
753,095 - Psyr_0664 0.36 +0.3
753,095 - Psyr_0664 0.36 +1.5
753,095 - Psyr_0664 0.36 +1.1
753,095 - Psyr_0664 0.36 -1.2
753,102 - Psyr_0664 0.37 -0.0
753,318 + Psyr_0664 0.64 +0.6

Or see this region's nucleotide sequence