Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0643

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0641 and Psyr_0642 overlap by 4 nucleotidesPsyr_0642 and Psyr_0643 are separated by 120 nucleotidesPsyr_0643 and Psyr_0644 are separated by 27 nucleotides Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029 _0641 Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331 _0642 Psyr_0643: Psyr_0643 - MaoC-like dehydratase, at 730,452 to 731,312 _0643 Psyr_0644: Psyr_0644 - Short-chain dehydrogenase/reductase SDR, at 731,340 to 732,695 _0644 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2 3at 729.597 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.896 kb on - strand, within Psyr_0641at 729.943 kb on + strand, within Psyr_0641at 729.977 kb on + strandat 729.977 kb on + strandat 729.978 kb on - strandat 729.978 kb on - strandat 730.117 kb on + strand, within Psyr_0642at 730.117 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.207 kb on - strand, within Psyr_0642at 730.352 kb on + strandat 730.352 kb on + strandat 730.352 kb on + strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.750 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.762 kb on - strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643at 731.341 kb on + strandat 731.341 kb on + strandat 731.341 kb on + strandat 731.342 kb on - strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strandat 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.719 kb on - strand, within Psyr_0644at 731.719 kb on - strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.892 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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729,597 - Psyr_0641 0.42 +0.1
729,597 - Psyr_0641 0.42 -1.7
729,707 + Psyr_0641 0.57 -0.6
729,707 + Psyr_0641 0.57 -0.3
729,707 + Psyr_0641 0.57 -0.7
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 +0.5
729,707 + Psyr_0641 0.57 +1.1
729,707 + Psyr_0641 0.57 +1.1
729,707 + Psyr_0641 0.57 +0.8
729,707 + Psyr_0641 0.57 -1.5
729,707 + Psyr_0641 0.57 -0.8
729,707 + Psyr_0641 0.57 -0.2
729,707 + Psyr_0641 0.57 +1.4
729,707 + Psyr_0641 0.57 -0.5
729,708 - Psyr_0641 0.57 -0.9
729,708 - Psyr_0641 0.57 +0.5
729,708 - Psyr_0641 0.57 +0.1
729,708 - Psyr_0641 0.57 +1.1
729,708 - Psyr_0641 0.57 +2.1
729,708 - Psyr_0641 0.57 +1.6
729,708 - Psyr_0641 0.57 -0.7
729,708 - Psyr_0641 0.57 +0.4
729,708 - Psyr_0641 0.57 -0.0
729,708 - Psyr_0641 0.57 -0.5
729,896 - Psyr_0641 0.82 -1.1
729,943 + Psyr_0641 0.88 -1.3
729,977 + +0.1
729,977 + -1.0
729,978 - -0.4
729,978 - +0.3
730,117 + Psyr_0642 0.30 -0.4
730,117 + Psyr_0642 0.30 -0.6
730,206 + Psyr_0642 0.59 -0.4
730,206 + Psyr_0642 0.59 -0.4
730,206 + Psyr_0642 0.59 +0.5
730,207 - Psyr_0642 0.59 +0.0
730,352 + +0.4
730,352 + -0.2
730,352 + +1.1
730,353 - +0.3
730,353 - -0.2
730,353 - +0.3
730,353 - +0.5
730,484 + -0.5
730,484 + -1.4
730,484 + +0.4
730,485 - -1.5
730,485 - -0.0
730,485 - +0.2
730,750 + Psyr_0643 0.35 +1.1
730,761 + Psyr_0643 0.36 +0.7
730,761 + Psyr_0643 0.36 +3.7
730,762 - Psyr_0643 0.36 +1.4
730,975 + Psyr_0643 0.61 -0.2
730,975 + Psyr_0643 0.61 -0.2
730,975 + Psyr_0643 0.61 -0.5
730,975 + Psyr_0643 0.61 -0.1
730,975 + Psyr_0643 0.61 -0.2
730,975 + Psyr_0643 0.61 +0.4
730,975 + Psyr_0643 0.61 +0.8
730,975 + Psyr_0643 0.61 -0.1
730,976 - Psyr_0643 0.61 +1.3
730,976 - Psyr_0643 0.61 -0.7
730,976 - Psyr_0643 0.61 +1.3
730,976 - Psyr_0643 0.61 +0.1
730,976 - Psyr_0643 0.61 +0.4
730,976 - Psyr_0643 0.61 +0.9
730,976 - Psyr_0643 0.61 +0.0
730,976 - Psyr_0643 0.61 +0.2
730,976 - Psyr_0643 0.61 +1.1
730,976 - Psyr_0643 0.61 -0.5
730,976 - Psyr_0643 0.61 -0.2
731,110 + Psyr_0643 0.76 +0.8
731,110 + Psyr_0643 0.76 +2.1
731,341 + -0.4
731,341 + -0.8
731,341 + +0.5
731,342 - +0.4
731,367 + -0.0
731,367 + -1.7
731,367 + -1.1
731,367 + -0.2
731,367 + +1.1
731,367 + -2.4
731,367 + -0.0
731,367 + +0.2
731,367 + +0.9
731,367 + -0.9
731,367 + -0.5
731,367 + +0.8
731,367 + -0.0
731,367 + -1.6
731,367 + -1.9
731,367 + +0.3
731,367 + +0.1
731,367 + -1.2
731,368 - +0.9
731,368 - +0.5
731,368 - -1.2
731,368 - -0.2
731,368 - +1.0
731,368 - +2.1
731,368 - +1.1
731,368 - -1.3
731,368 - +2.4
731,368 - +1.1
731,368 - -0.5
731,368 - +0.1
731,368 - +2.1
731,368 - -0.1
731,368 - +0.4
731,373 + +0.5
731,373 + -0.2
731,373 + +1.3
731,373 + +0.7
731,374 - +0.0
731,374 - +0.6
731,374 - +0.3
731,374 - -0.1
731,374 - +1.1
731,626 + Psyr_0644 0.21 +0.5
731,626 + Psyr_0644 0.21 +0.2
731,626 + Psyr_0644 0.21 +0.9
731,626 + +2.1
731,626 + Psyr_0644 0.21 +1.2
731,626 + Psyr_0644 0.21 -0.3
731,626 + Psyr_0644 0.21 -1.0
731,627 - Psyr_0644 0.21 +1.5
731,627 - Psyr_0644 0.21 +0.8
731,627 - Psyr_0644 0.21 -0.6
731,718 + Psyr_0644 0.28 +0.1
731,718 + Psyr_0644 0.28 -0.8
731,718 + Psyr_0644 0.28 -0.4
731,718 + Psyr_0644 0.28 -1.2
731,719 - Psyr_0644 0.28 -2.1
731,719 - Psyr_0644 0.28 -0.9
731,832 + Psyr_0644 0.36 +1.1
731,832 + Psyr_0644 0.36 -1.6
731,832 + Psyr_0644 0.36 -1.5
731,832 + Psyr_0644 0.36 +1.1
731,832 + Psyr_0644 0.36 -1.8
731,832 + Psyr_0644 0.36 +0.2
731,832 + Psyr_0644 0.36 +0.7
731,832 + Psyr_0644 0.36 -1.2
731,833 - Psyr_0644 0.36 +0.9
731,833 - Psyr_0644 0.36 +0.8
731,833 - Psyr_0644 0.36 -0.1
731,833 - Psyr_0644 0.36 -0.5
731,833 - Psyr_0644 0.36 +0.8
731,833 - Psyr_0644 0.36 +0.4
731,892 - Psyr_0644 0.41 +2.8
731,959 - Psyr_0644 0.46 -0.1
731,959 - Psyr_0644 0.46 -1.2
731,959 - Psyr_0644 0.46 -0.1

Or see this region's nucleotide sequence