Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0629 and Psyr_0630 are separated by 225 nucleotides Psyr_0630 and Psyr_0631 overlap by 4 nucleotides Psyr_0631 and Psyr_0632 overlap by 8 nucleotides
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Psyr_0630: Psyr_0630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 720,550 to 721,899
_0630
Psyr_0631: Psyr_0631 - Flavoprotein, at 721,896 to 722,525
_0631
Psyr_0632: Psyr_0632 - Protein of unknown function DUF1375, at 722,518 to 722,802
_0632
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.854 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.880 kb on - strand, within Psyr_0629 at 719.890 kb on - strand, within Psyr_0629 at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.264 kb on + strand at 720.264 kb on + strand at 720.265 kb on - strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.403 kb on + strand at 720.404 kb on - strand at 720.404 kb on - strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.469 kb on - strand at 720.514 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.706 kb on + strand, within Psyr_0630 at 720.706 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.811 kb on + strand, within Psyr_0630 at 721.075 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 722.507 kb on + strand at 722.507 kb on + strand at 722.523 kb on + strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.695 kb on + strand, within Psyr_0632 at 722.801 kb on - strand at 722.838 kb on + strand at 722.838 kb on + strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.840 kb on + strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 719,854 + Psyr_0629 0.69 +0.2 719,879 + Psyr_0629 0.71 -0.9 719,879 + Psyr_0629 0.71 -1.2 719,880 - Psyr_0629 0.71 +0.4 719,890 - Psyr_0629 0.71 +0.2 720,221 + +0.8 720,221 + -0.1 720,221 + -1.1 720,222 - -0.5 720,222 - +1.5 720,222 - -0.7 720,260 + -0.2 720,260 + +0.3 720,260 + +0.5 720,260 + -0.2 720,260 + -2.7 720,260 + +0.5 720,261 - -0.2 720,261 - -0.6 720,261 - -0.0 720,261 - +0.7 720,261 - -0.7 720,261 - +0.6 720,261 - -1.1 720,264 + -1.0 720,264 + -0.0 720,265 - -0.6 720,327 + +0.5 720,327 + +0.9 720,327 + +0.1 720,327 + -0.6 720,327 + -0.7 720,327 + -0.7 720,327 + +1.0 720,327 + -1.5 720,327 + -1.3 720,327 + -1.1 720,327 + +1.2 720,327 + +1.1 720,327 + +0.3 720,328 - +0.4 720,328 - +0.1 720,328 - +0.5 720,328 - -0.3 720,328 - -0.9 720,328 - +0.3 720,328 - -1.9 720,328 - +0.1 720,328 - +0.1 720,328 - -0.3 720,328 - -1.4 720,328 - -1.5 720,328 - +0.3 720,328 - +0.2 720,328 - -0.8 720,328 - -0.2 720,403 + +0.8 720,404 - +0.2 720,404 - +0.4 720,436 + -0.4 720,436 + -0.9 720,436 + -1.7 720,437 - -0.3 720,442 + -0.4 720,442 + -0.4 720,442 + -0.1 720,443 - -2.4 720,443 - -0.1 720,443 - +3.1 720,443 - +0.5 720,469 - +1.1 720,514 + -1.2 720,555 + +0.6 720,555 + +0.7 720,555 + -0.8 720,555 + -2.0 720,555 + -0.1 720,555 + -1.0 720,555 + -2.4 720,555 + -1.0 720,555 + -0.5 720,555 + -1.5 720,555 + -0.5 720,706 + Psyr_0630 0.12 +0.7 720,706 + Psyr_0630 0.12 -3.3 720,787 + Psyr_0630 0.18 -1.4 720,787 + Psyr_0630 0.18 -0.2 720,787 + Psyr_0630 0.18 +0.5 720,811 + Psyr_0630 0.19 -0.5 721,075 + Psyr_0630 0.39 -0.3 721,524 + Psyr_0630 0.72 +0.1 721,524 + Psyr_0630 0.72 -2.2 721,524 + Psyr_0630 0.72 -0.1 721,524 + Psyr_0630 0.72 -0.3 721,524 + Psyr_0630 0.72 -1.4 721,524 + Psyr_0630 0.72 -1.6 721,524 + Psyr_0630 0.72 -0.9 721,528 + Psyr_0630 0.72 -1.5 721,528 + Psyr_0630 0.72 -0.1 721,528 + Psyr_0630 0.72 -1.7 721,528 + Psyr_0630 0.72 -1.9 721,528 + Psyr_0630 0.72 +1.1 721,528 + Psyr_0630 0.72 -0.6 721,528 + Psyr_0630 0.72 -2.0 722,507 + +1.2 722,507 + -0.2 722,523 + +1.2 722,524 - -0.7 722,524 - +0.5 722,524 - +0.2 722,524 - +0.4 722,614 + Psyr_0632 0.34 +0.1 722,614 + Psyr_0632 0.34 +1.1 722,614 + Psyr_0632 0.34 -1.4 722,614 + Psyr_0632 0.34 +1.1 722,614 + Psyr_0632 0.34 -0.5 722,614 + Psyr_0632 0.34 +1.6 722,614 + Psyr_0632 0.34 -0.3 722,615 - Psyr_0632 0.34 +0.8 722,615 - Psyr_0632 0.34 -0.5 722,615 - Psyr_0632 0.34 +0.7 722,615 - Psyr_0632 0.34 -0.6 722,615 - Psyr_0632 0.34 -1.2 722,615 - Psyr_0632 0.34 -0.5 722,615 - Psyr_0632 0.34 -1.4 722,615 - Psyr_0632 0.34 +0.5 722,615 - Psyr_0632 0.34 -0.8 722,615 - Psyr_0632 0.34 -0.3 722,634 + Psyr_0632 0.41 +1.7 722,634 + Psyr_0632 0.41 +0.5 722,634 + Psyr_0632 0.41 -1.9 722,634 + Psyr_0632 0.41 +0.3 722,634 + Psyr_0632 0.41 +0.7 722,634 + Psyr_0632 0.41 +1.0 722,634 + Psyr_0632 0.41 -0.7 722,634 + Psyr_0632 0.41 -0.3 722,634 + Psyr_0632 0.41 -0.5 722,634 + Psyr_0632 0.41 -0.1 722,634 + Psyr_0632 0.41 -0.0 722,634 + Psyr_0632 0.41 -0.1 722,634 + Psyr_0632 0.41 +1.5 722,634 + Psyr_0632 0.41 -1.5 722,634 + Psyr_0632 0.41 +0.3 722,635 - Psyr_0632 0.41 +0.6 722,635 - Psyr_0632 0.41 -1.0 722,635 - Psyr_0632 0.41 +0.5 722,635 - Psyr_0632 0.41 -0.2 722,635 - Psyr_0632 0.41 +0.0 722,635 - Psyr_0632 0.41 +1.1 722,635 - Psyr_0632 0.41 -0.5 722,635 - Psyr_0632 0.41 -1.2 722,635 - Psyr_0632 0.41 +0.3 722,635 - Psyr_0632 0.41 -1.2 722,635 - Psyr_0632 0.41 +1.3 722,635 - Psyr_0632 0.41 -1.0 722,638 + Psyr_0632 0.42 +0.9 722,638 + Psyr_0632 0.42 -0.5 722,638 + Psyr_0632 0.42 +1.0 722,638 + Psyr_0632 0.42 +1.2 722,638 + Psyr_0632 0.42 +0.0 722,638 + Psyr_0632 0.42 -0.6 722,638 + Psyr_0632 0.42 +0.1 722,638 + Psyr_0632 0.42 -0.5 722,638 + Psyr_0632 0.42 +0.1 722,638 + Psyr_0632 0.42 -0.9 722,638 + Psyr_0632 0.42 -0.3 722,638 + Psyr_0632 0.42 -0.2 722,638 + Psyr_0632 0.42 -1.7 722,639 - Psyr_0632 0.42 -0.5 722,639 - Psyr_0632 0.42 -0.4 722,639 - Psyr_0632 0.42 +0.3 722,639 - Psyr_0632 0.42 +0.6 722,639 - Psyr_0632 0.42 +0.9 722,639 - Psyr_0632 0.42 +1.4 722,639 - Psyr_0632 0.42 -0.0 722,639 - Psyr_0632 0.42 -1.9 722,639 - Psyr_0632 0.42 +0.3 722,639 - Psyr_0632 0.42 +2.0 722,695 + Psyr_0632 0.62 -0.6 722,801 - -0.5 722,838 + -0.3 722,838 + +0.5 722,839 - +0.2 722,839 - -0.3 722,839 - +0.6 722,840 + +1.1 722,841 - -1.2 722,841 - -0.5 722,841 - +0.4 722,841 - -0.2 722,841 - -0.3 722,841 - +0.1 722,841 - -0.1 722,842 + -0.5 722,842 + -0.2 722,842 + -1.5 722,842 + +1.2 722,842 + -0.2 722,842 + +1.3 722,843 - -0.9 722,843 - +2.1 722,843 - +1.8 722,843 - +1.1 722,843 - -0.1 722,843 - -0.2 722,843 - -0.7 722,843 - -0.7 722,843 - -2.1 722,843 - -0.5
Or see this region's nucleotide sequence