Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0558

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0557 and Psyr_0558 are separated by 65 nucleotidesPsyr_0558 and Psyr_0559 are separated by 255 nucleotides Psyr_0557: Psyr_0557 - phosphoserine phosphatase, at 631,007 to 632,263 _0557 Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113 _0558 Psyr_0559: Psyr_0559 - thiosulfate sulfurtransferase, at 634,369 to 636,201 _0559 Position (kb) 632 633 634 635Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 631.413 kb on - strand, within Psyr_0557at 631.791 kb on + strand, within Psyr_0557at 631.881 kb on - strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.953 kb on - strand, within Psyr_0557at 631.953 kb on - strand, within Psyr_0557at 631.953 kb on - strand, within Psyr_0557at 631.953 kb on - strand, within Psyr_0557at 632.225 kb on + strandat 632.225 kb on + strandat 632.225 kb on + strandat 632.226 kb on - strandat 632.226 kb on - strandat 632.226 kb on - strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.430 kb on - strandat 632.430 kb on - strandat 632.563 kb on + strand, within Psyr_0558at 632.564 kb on - strand, within Psyr_0558at 632.592 kb on - strand, within Psyr_0558at 632.686 kb on + strand, within Psyr_0558at 632.687 kb on - strand, within Psyr_0558at 632.746 kb on - strand, within Psyr_0558at 632.829 kb on + strand, within Psyr_0558at 632.916 kb on - strand, within Psyr_0558at 633.074 kb on + strand, within Psyr_0558at 633.074 kb on + strand, within Psyr_0558at 633.074 kb on + strand, within Psyr_0558at 633.129 kb on + strand, within Psyr_0558at 633.129 kb on + strand, within Psyr_0558at 633.130 kb on - strand, within Psyr_0558at 633.255 kb on - strand, within Psyr_0558at 633.255 kb on - strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.286 kb on - strand, within Psyr_0558at 633.286 kb on - strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.965 kb on + strandat 634.087 kb on + strandat 634.088 kb on - strandat 634.160 kb on + strandat 634.161 kb on - strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.203 kb on - strandat 634.223 kb on + strandat 634.223 kb on + strandat 634.224 kb on - strandat 634.224 kb on - strandat 634.224 kb on - strandat 634.228 kb on + strandat 634.229 kb on - strandat 634.229 kb on - strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.265 kb on - strandat 634.265 kb on - strandat 634.265 kb on - strandat 634.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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631,413 - Psyr_0557 0.32 +1.3
631,791 + Psyr_0557 0.62 +0.1
631,881 - Psyr_0557 0.70 +0.1
631,913 + Psyr_0557 0.72 +0.4
631,913 + Psyr_0557 0.72 -0.4
631,913 + Psyr_0557 0.72 -0.6
631,952 + Psyr_0557 0.75 -0.4
631,952 + Psyr_0557 0.75 -0.4
631,952 + Psyr_0557 0.75 -0.7
631,952 + Psyr_0557 0.75 -1.5
631,952 + Psyr_0557 0.75 -0.8
631,953 - Psyr_0557 0.75 +0.6
631,953 - Psyr_0557 0.75 -0.3
631,953 - Psyr_0557 0.75 -1.2
631,953 - Psyr_0557 0.75 -1.8
632,225 + +2.9
632,225 + +1.1
632,225 + +0.0
632,226 - -0.5
632,226 - -0.1
632,226 - -1.2
632,405 + -0.2
632,405 + -0.5
632,405 + -0.3
632,405 + +1.7
632,405 + -0.6
632,405 + -1.1
632,405 + -1.7
632,406 - +0.4
632,406 - -0.1
632,406 - -0.4
632,406 - -0.6
632,406 - +0.1
632,406 - +0.6
632,429 + -0.7
632,429 + -3.1
632,429 + -1.1
632,429 + +1.1
632,429 + -0.1
632,429 + +1.1
632,430 - -0.4
632,430 - +0.6
632,563 + Psyr_0558 0.13 +0.8
632,564 - Psyr_0558 0.13 +0.1
632,592 - Psyr_0558 0.15 +0.4
632,686 + Psyr_0558 0.20 +2.1
632,687 - Psyr_0558 0.20 -0.0
632,746 - Psyr_0558 0.23 +1.5
632,829 + Psyr_0558 0.28 +1.6
632,916 - Psyr_0558 0.33 +0.9
633,074 + Psyr_0558 0.42 +1.1
633,074 + Psyr_0558 0.42 +2.1
633,074 + Psyr_0558 0.42 +0.2
633,129 + Psyr_0558 0.45 +0.1
633,129 + Psyr_0558 0.45 -0.1
633,130 - Psyr_0558 0.45 +0.8
633,255 - Psyr_0558 0.52 -0.9
633,255 - Psyr_0558 0.52 -0.0
633,285 + Psyr_0558 0.54 -0.1
633,285 + Psyr_0558 0.54 +0.5
633,285 + Psyr_0558 0.54 +0.3
633,285 + Psyr_0558 0.54 +0.6
633,285 + Psyr_0558 0.54 +0.9
633,286 - Psyr_0558 0.54 +1.4
633,286 - Psyr_0558 0.54 +1.7
633,506 + Psyr_0558 0.66 +1.0
633,506 + Psyr_0558 0.66 +0.9
633,506 + Psyr_0558 0.66 +1.3
633,506 + Psyr_0558 0.66 -1.2
633,506 + Psyr_0558 0.66 +0.0
633,506 + Psyr_0558 0.66 -0.0
633,506 + Psyr_0558 0.66 +1.1
633,506 + Psyr_0558 0.66 +0.8
633,506 + Psyr_0558 0.66 -1.0
633,506 + Psyr_0558 0.66 -0.1
633,506 + Psyr_0558 0.66 +0.4
633,507 - Psyr_0558 0.66 -0.9
633,507 - Psyr_0558 0.66 +0.3
633,507 - Psyr_0558 0.66 +2.9
633,507 - Psyr_0558 0.66 +0.1
633,507 - Psyr_0558 0.66 -1.1
633,507 - Psyr_0558 0.66 -1.5
633,507 - Psyr_0558 0.66 -0.5
633,571 + Psyr_0558 0.70 -0.2
633,571 + Psyr_0558 0.70 +1.1
633,571 + Psyr_0558 0.70 -0.1
633,571 + Psyr_0558 0.70 -1.4
633,572 - Psyr_0558 0.70 +0.5
633,641 + Psyr_0558 0.74 +1.5
633,641 + Psyr_0558 0.74 +0.5
633,642 - Psyr_0558 0.74 +1.3
633,642 - Psyr_0558 0.74 +0.8
633,642 - Psyr_0558 0.74 +0.5
633,642 - Psyr_0558 0.74 +0.2
633,765 - Psyr_0558 0.80 +0.6
633,765 - Psyr_0558 0.80 +0.6
633,881 + Psyr_0558 0.87 +0.4
633,881 + Psyr_0558 0.87 -0.1
633,881 + Psyr_0558 0.87 +0.1
633,881 + Psyr_0558 0.87 +0.2
633,881 + Psyr_0558 0.87 -1.5
633,881 + Psyr_0558 0.87 -0.1
633,882 - Psyr_0558 0.87 -0.5
633,882 - Psyr_0558 0.87 +0.0
633,882 - Psyr_0558 0.87 +1.1
633,882 - Psyr_0558 0.87 -1.0
633,882 - Psyr_0558 0.87 +0.6
633,882 - Psyr_0558 0.87 +0.5
633,882 - Psyr_0558 0.87 -0.0
633,882 - Psyr_0558 0.87 +0.1
633,882 - Psyr_0558 0.87 -0.2
633,882 - Psyr_0558 0.87 +0.1
633,882 - Psyr_0558 0.87 +1.1
633,882 - Psyr_0558 0.87 -0.2
633,882 - Psyr_0558 0.87 +0.5
633,965 + +0.7
634,087 + +0.0
634,088 - +0.2
634,160 + -0.1
634,161 - -0.1
634,202 + +0.3
634,202 + -0.8
634,202 + +0.8
634,202 + +0.4
634,202 + +0.1
634,203 - +1.1
634,223 + -0.2
634,223 + -1.5
634,224 - +0.6
634,224 - -0.3
634,224 - -0.8
634,228 + -1.1
634,229 - -0.1
634,229 - -0.8
634,264 + +0.1
634,264 + +0.6
634,264 + +0.2
634,265 - -0.3
634,265 - +0.9
634,265 - +0.1
634,327 + -0.0

Or see this region's nucleotide sequence