Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0266 and Psyr_0267 overlap by 4 nucleotides Psyr_0267 and Psyr_0268 are separated by 9 nucleotides Psyr_0268 and Psyr_0269 are separated by 221 nucleotides
Psyr_0266: Psyr_0266 - GGDEF domain protein, at 282,921 to 284,993
_0266
Psyr_0267: Psyr_0267 - Endonuclease/exonuclease/phosphatase, at 284,990 to 285,865
_0267
Psyr_0268: Psyr_0268 - DSBA oxidoreductase, at 285,875 to 286,519
_0268
Psyr_0269: Psyr_0269 - cell division checkpoint GTPase YihA, at 286,741 to 287,448
_0269
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.087 kb on - strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.749 kb on - strand, within Psyr_0266 at 284.959 kb on + strand at 284.959 kb on + strand at 284.960 kb on - strand at 284.960 kb on - strand at 284.960 kb on - strand at 285.185 kb on + strand, within Psyr_0267 at 285.185 kb on + strand, within Psyr_0267 at 285.186 kb on - strand, within Psyr_0267 at 285.306 kb on + strand, within Psyr_0267 at 285.306 kb on + strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.467 kb on + strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.519 kb on + strand, within Psyr_0267 at 285.706 kb on - strand, within Psyr_0267 at 285.714 kb on + strand, within Psyr_0267 at 285.876 kb on + strand at 285.876 kb on + strand at 285.877 kb on - strand at 285.877 kb on - strand at 285.877 kb on - strand at 285.975 kb on + strand, within Psyr_0268 at 286.178 kb on + strand, within Psyr_0268 at 286.425 kb on + strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.468 kb on + strand at 286.513 kb on + strand at 286.592 kb on + strand at 286.598 kb on - strand at 286.611 kb on + strand at 286.644 kb on + strand at 286.644 kb on + strand at 286.701 kb on + strand at 286.701 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 284,087 - Psyr_0266 0.56 -0.4 284,362 + Psyr_0266 0.70 -0.1 284,362 + Psyr_0266 0.70 +2.2 284,363 - Psyr_0266 0.70 -0.7 284,363 - Psyr_0266 0.70 -0.1 284,363 - Psyr_0266 0.70 -0.9 284,363 - Psyr_0266 0.70 -0.2 284,363 - Psyr_0266 0.70 -0.1 284,366 + Psyr_0266 0.70 +0.7 284,366 + Psyr_0266 0.70 -0.0 284,366 + Psyr_0266 0.70 +0.3 284,366 + Psyr_0266 0.70 +0.3 284,366 + Psyr_0266 0.70 +0.2 284,646 + Psyr_0266 0.83 +0.2 284,646 + Psyr_0266 0.83 +0.3 284,647 - Psyr_0266 0.83 -0.0 284,647 - Psyr_0266 0.83 -1.1 284,749 - Psyr_0266 0.88 -1.8 284,959 + +1.0 284,959 + -1.0 284,960 - -0.9 284,960 - +1.0 284,960 - -0.4 285,185 + Psyr_0267 0.22 +1.4 285,185 + Psyr_0267 0.22 +0.9 285,186 - Psyr_0267 0.22 +1.5 285,306 + Psyr_0267 0.36 -0.2 285,306 + Psyr_0267 0.36 +0.7 285,307 - Psyr_0267 0.36 -0.1 285,307 - Psyr_0267 0.36 +2.4 285,467 + Psyr_0267 0.54 -0.3 285,468 - Psyr_0267 0.55 +0.3 285,468 - Psyr_0267 0.55 +0.1 285,468 - Psyr_0267 0.55 -0.6 285,468 - Psyr_0267 0.55 +0.7 285,468 - Psyr_0267 0.55 +0.2 285,468 - Psyr_0267 0.55 +0.2 285,519 + Psyr_0267 0.60 +1.3 285,706 - Psyr_0267 0.82 -1.6 285,714 + Psyr_0267 0.83 +0.3 285,876 + +1.9 285,876 + +0.1 285,877 - -1.8 285,877 - +0.2 285,877 - +1.6 285,975 + Psyr_0268 0.16 -0.4 286,178 + Psyr_0268 0.47 -0.4 286,425 + Psyr_0268 0.85 +0.6 286,426 - Psyr_0268 0.85 -0.8 286,426 - Psyr_0268 0.85 +0.8 286,426 - Psyr_0268 0.85 +1.5 286,468 + -0.6 286,513 + -0.1 286,592 + +0.2 286,598 - +0.7 286,611 + -2.2 286,644 + -0.5 286,644 + -0.5 286,701 + -1.1 286,701 + +2.2 286,738 + +0.6 286,738 + -0.3 286,738 + +1.1 286,738 + +0.9 286,738 + +0.4 286,740 + -0.5 286,740 + +0.7 286,740 + +0.1 286,740 + +0.4 286,740 + -0.7 286,740 + -1.5 286,740 + +0.0 286,740 + +1.2 286,741 + -0.0
Or see this region's nucleotide sequence