Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0099

Experiment: KB with Erythromycin 25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0098 and Psyr_0099 are separated by 8 nucleotidesPsyr_0099 and Psyr_0100 are separated by 893 nucleotides Psyr_0098: Psyr_0098 - Protein of unknown function DUF87, at 109,452 to 111,323 _0098 Psyr_0099: Psyr_0099 - Conserved hypothetical protein, at 111,332 to 111,541 _0099 Psyr_0100: Psyr_0100 - conserved hypothetical protein, at 112,435 to 112,968 _0100 Position (kb) 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.474 kb on + strand, within Psyr_0098at 110.475 kb on - strand, within Psyr_0098at 110.508 kb on + strand, within Psyr_0098at 110.573 kb on + strand, within Psyr_0098at 110.573 kb on + strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.585 kb on + strand, within Psyr_0098at 110.587 kb on + strand, within Psyr_0098at 110.715 kb on - strand, within Psyr_0098at 110.715 kb on - strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on - strand, within Psyr_0098at 110.754 kb on + strand, within Psyr_0098at 110.834 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.838 kb on + strand, within Psyr_0098at 110.839 kb on - strand, within Psyr_0098at 110.890 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.915 kb on - strand, within Psyr_0098at 110.957 kb on + strand, within Psyr_0098at 110.958 kb on - strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 111.015 kb on - strand, within Psyr_0098at 111.027 kb on - strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.099 kb on - strand, within Psyr_0098at 111.099 kb on - strand, within Psyr_0098at 111.115 kb on + strand, within Psyr_0098at 111.126 kb on - strand, within Psyr_0098at 111.126 kb on - strand, within Psyr_0098at 111.137 kb on + strandat 111.137 kb on + strandat 111.137 kb on + strandat 111.138 kb on - strandat 111.142 kb on + strandat 111.182 kb on + strandat 111.258 kb on - strandat 111.262 kb on - strandat 111.444 kb on + strand, within Psyr_0099at 111.512 kb on - strand, within Psyr_0099at 111.523 kb on + strandat 111.527 kb on + strandat 111.543 kb on + strandat 111.581 kb on + strandat 111.582 kb on - strandat 111.590 kb on - strandat 111.624 kb on - strandat 111.712 kb on - strandat 111.716 kb on + strandat 111.716 kb on + strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.756 kb on - strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.905 kb on - strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.907 kb on - strandat 111.907 kb on - strandat 111.908 kb on + strandat 111.908 kb on + strandat 111.909 kb on - strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.914 kb on + strandat 111.914 kb on + strandat 111.915 kb on - strandat 111.915 kb on - strandat 111.915 kb on - strandat 111.916 kb on + strandat 111.916 kb on + strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.960 kb on - strandat 111.973 kb on + strandat 111.973 kb on + strandat 111.974 kb on - strandat 111.997 kb on - strandat 111.997 kb on - strandat 112.021 kb on - strandat 112.115 kb on + strandat 112.147 kb on - strandat 112.173 kb on + strandat 112.173 kb on + strandat 112.173 kb on + strandat 112.522 kb on + strand, within Psyr_0100at 112.522 kb on + strand, within Psyr_0100at 112.522 kb on + strand, within Psyr_0100at 112.523 kb on - strand, within Psyr_0100at 112.527 kb on - strand, within Psyr_0100at 112.527 kb on - strand, within Psyr_0100at 112.531 kb on - strand, within Psyr_0100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
remove
110,474 + Psyr_0098 0.55 -0.4
110,475 - Psyr_0098 0.55 +0.2
110,508 + Psyr_0098 0.56 -0.8
110,573 + Psyr_0098 0.60 -0.5
110,573 + Psyr_0098 0.60 -0.2
110,574 - Psyr_0098 0.60 +0.5
110,574 - Psyr_0098 0.60 -0.3
110,574 - Psyr_0098 0.60 +1.2
110,585 + Psyr_0098 0.61 -1.8
110,587 + Psyr_0098 0.61 +0.4
110,715 - Psyr_0098 0.67 -0.6
110,715 - Psyr_0098 0.67 +0.2
110,752 + Psyr_0098 0.69 -0.1
110,752 + Psyr_0098 0.69 -0.4
110,752 + Psyr_0098 0.69 -0.3
110,752 + Psyr_0098 0.69 +0.3
110,752 - Psyr_0098 0.69 -0.3
110,754 + Psyr_0098 0.70 +1.0
110,834 + Psyr_0098 0.74 +0.6
110,836 + Psyr_0098 0.74 -0.0
110,836 + Psyr_0098 0.74 -0.6
110,836 + Psyr_0098 0.74 +1.0
110,836 + Psyr_0098 0.74 -0.2
110,836 + Psyr_0098 0.74 -0.3
110,836 + Psyr_0098 0.74 -0.4
110,837 - Psyr_0098 0.74 -0.6
110,837 - Psyr_0098 0.74 +0.9
110,837 - Psyr_0098 0.74 +0.1
110,837 - Psyr_0098 0.74 +0.9
110,837 - Psyr_0098 0.74 +0.2
110,837 - Psyr_0098 0.74 -1.3
110,837 - Psyr_0098 0.74 -0.5
110,837 - Psyr_0098 0.74 +0.0
110,837 - Psyr_0098 0.74 -0.6
110,837 - Psyr_0098 0.74 -0.2
110,837 - Psyr_0098 0.74 -0.2
110,837 - Psyr_0098 0.74 -0.3
110,838 + Psyr_0098 0.74 +0.0
110,839 - Psyr_0098 0.74 +0.6
110,890 + Psyr_0098 0.77 +0.6
110,914 + Psyr_0098 0.78 +0.2
110,914 + Psyr_0098 0.78 -0.3
110,914 + Psyr_0098 0.78 +1.2
110,915 - Psyr_0098 0.78 -1.6
110,957 + Psyr_0098 0.80 -0.7
110,958 - Psyr_0098 0.80 -0.8
110,993 + Psyr_0098 0.82 -0.8
110,993 + Psyr_0098 0.82 -1.1
110,993 + Psyr_0098 0.82 -1.6
111,015 - Psyr_0098 0.83 -1.4
111,027 - Psyr_0098 0.84 -0.5
111,065 + Psyr_0098 0.86 -0.1
111,065 + Psyr_0098 0.86 +0.1
111,065 + Psyr_0098 0.86 -0.1
111,065 + Psyr_0098 0.86 -0.1
111,066 - Psyr_0098 0.86 +0.4
111,066 - Psyr_0098 0.86 -0.5
111,066 - Psyr_0098 0.86 +0.2
111,066 - Psyr_0098 0.86 -0.7
111,066 - Psyr_0098 0.86 +0.8
111,099 - Psyr_0098 0.88 -0.2
111,099 - Psyr_0098 0.88 -0.2
111,115 + Psyr_0098 0.89 -3.7
111,126 - Psyr_0098 0.89 -2.2
111,126 - Psyr_0098 0.89 +0.8
111,137 + -0.3
111,137 + -1.0
111,137 + -1.1
111,138 - +0.2
111,142 + -0.8
111,182 + +1.0
111,258 - +0.2
111,262 - +0.2
111,444 + Psyr_0099 0.53 -0.5
111,512 - Psyr_0099 0.86 -0.9
111,523 + -1.5
111,527 + +0.1
111,543 + +1.0
111,581 + -0.3
111,582 - +0.1
111,590 - -1.0
111,624 - +0.2
111,712 - +0.2
111,716 + -0.5
111,716 + +0.8
111,717 - +0.0
111,717 - +0.7
111,717 - -0.3
111,717 - +0.4
111,756 - +0.2
111,801 + -0.3
111,801 + +0.2
111,801 + -2.3
111,801 + -0.4
111,801 + +1.2
111,802 - -1.8
111,802 - -0.3
111,802 - +0.8
111,802 - -1.9
111,905 - -0.3
111,906 + -2.3
111,906 + -0.8
111,906 + +0.2
111,906 + +0.7
111,906 + -0.2
111,907 - +0.1
111,907 - -0.2
111,908 + -0.1
111,908 + -0.8
111,909 - +0.8
111,910 + -1.7
111,910 + -2.5
111,910 + -0.3
111,910 + -1.6
111,911 - +0.1
111,911 - +0.5
111,911 - +0.4
111,911 - +0.2
111,914 + +0.2
111,914 + -0.6
111,915 - +1.6
111,915 - -0.0
111,915 - -0.6
111,916 + +0.2
111,916 + -1.8
111,917 - +1.0
111,917 - -0.7
111,917 - +0.4
111,917 - +0.5
111,960 - -0.5
111,973 + -0.9
111,973 + -0.7
111,974 - +2.0
111,997 - -2.8
111,997 - +0.2
112,021 - -0.3
112,115 + -0.9
112,147 - +0.6
112,173 + -0.5
112,173 + -1.1
112,173 + -1.1
112,522 + Psyr_0100 0.16 +1.2
112,522 + Psyr_0100 0.16 -0.4
112,522 + Psyr_0100 0.16 +1.2
112,523 - Psyr_0100 0.16 -0.1
112,527 - Psyr_0100 0.17 +1.0
112,527 - Psyr_0100 0.17 +0.4
112,531 - Psyr_0100 0.18 -0.7

Or see this region's nucleotide sequence