Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_829

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_827 and Pf6N2E2_828 are separated by 127 nucleotidesPf6N2E2_828 and Pf6N2E2_829 are separated by 201 nucleotidesPf6N2E2_829 and Pf6N2E2_830 are separated by 51 nucleotides Pf6N2E2_827 - probable dioxygenase, at 965,843 to 966,268 _827 Pf6N2E2_828 - Transcriptional regulator, TetR family, at 966,396 to 967,016 _828 Pf6N2E2_829 - TesB-like acyl-CoA thioesterase 1, at 967,218 to 967,997 _829 Pf6N2E2_830 - Long-chain fatty acid transport protein, at 968,049 to 969,320 _830 Position (kb) 967 968Strain fitness (log2 ratio) -1 0 1 2 3at 966.384 kb on + strandat 966.384 kb on + strandat 966.496 kb on - strand, within Pf6N2E2_828at 966.555 kb on + strand, within Pf6N2E2_828at 966.555 kb on + strand, within Pf6N2E2_828at 966.556 kb on - strand, within Pf6N2E2_828at 966.556 kb on - strand, within Pf6N2E2_828at 966.556 kb on - strand, within Pf6N2E2_828at 966.561 kb on + strand, within Pf6N2E2_828at 966.562 kb on - strand, within Pf6N2E2_828at 966.747 kb on + strand, within Pf6N2E2_828at 966.747 kb on + strand, within Pf6N2E2_828at 966.799 kb on - strand, within Pf6N2E2_828at 966.934 kb on + strand, within Pf6N2E2_828at 966.945 kb on + strand, within Pf6N2E2_828at 966.945 kb on + strand, within Pf6N2E2_828at 967.077 kb on - strandat 967.142 kb on + strandat 967.215 kb on + strandat 967.216 kb on - strandat 967.216 kb on - strandat 967.216 kb on - strandat 967.399 kb on + strand, within Pf6N2E2_829at 967.399 kb on + strand, within Pf6N2E2_829at 967.399 kb on + strand, within Pf6N2E2_829at 967.400 kb on - strand, within Pf6N2E2_829at 967.400 kb on - strand, within Pf6N2E2_829at 967.928 kb on + strandat 967.991 kb on + strandat 967.992 kb on - strandat 967.992 kb on - strandat 967.995 kb on + strandat 967.996 kb on - strandat 967.998 kb on + strandat 967.998 kb on + strandat 967.999 kb on - strandat 968.036 kb on + strandat 968.036 kb on + strandat 968.036 kb on + strandat 968.037 kb on - strandat 968.037 kb on - strandat 968.037 kb on - strandat 968.037 kb on - strandat 968.037 kb on - strandat 968.044 kb on + strandat 968.044 kb on + strandat 968.045 kb on - strandat 968.045 kb on - strandat 968.045 kb on - strandat 968.047 kb on + strandat 968.047 kb on + strandat 968.047 kb on + strandat 968.048 kb on - strandat 968.144 kb on + strandat 968.144 kb on + strandat 968.145 kb on - strandat 968.145 kb on - strandat 968.145 kb on - strandat 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.367 kb on + strand, within Pf6N2E2_830at 968.368 kb on - strand, within Pf6N2E2_830at 968.412 kb on + strand, within Pf6N2E2_830at 968.413 kb on - strand, within Pf6N2E2_830at 968.466 kb on + strand, within Pf6N2E2_830at 968.517 kb on + strand, within Pf6N2E2_830at 968.517 kb on + strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.736 kb on + strand, within Pf6N2E2_830at 968.737 kb on - strand, within Pf6N2E2_830at 968.737 kb on - strand, within Pf6N2E2_830at 968.805 kb on + strand, within Pf6N2E2_830at 968.806 kb on - strand, within Pf6N2E2_830at 968.806 kb on - strand, within Pf6N2E2_830at 968.886 kb on + strand, within Pf6N2E2_830at 968.886 kb on + strand, within Pf6N2E2_830at 968.887 kb on - strand, within Pf6N2E2_830at 968.887 kb on - strand, within Pf6N2E2_830at 968.898 kb on - strand, within Pf6N2E2_830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
966,384 + -1.3
966,384 + -1.7
966,496 - Pf6N2E2_828 0.16 -0.4
966,555 + Pf6N2E2_828 0.26 -0.9
966,555 + Pf6N2E2_828 0.26 +0.2
966,556 - Pf6N2E2_828 0.26 -1.0
966,556 - Pf6N2E2_828 0.26 +1.2
966,556 - Pf6N2E2_828 0.26 +0.6
966,561 + Pf6N2E2_828 0.27 -1.0
966,562 - Pf6N2E2_828 0.27 -0.3
966,747 + Pf6N2E2_828 0.57 +1.4
966,747 + Pf6N2E2_828 0.57 -0.7
966,799 - Pf6N2E2_828 0.65 +0.5
966,934 + Pf6N2E2_828 0.87 +3.0
966,945 + Pf6N2E2_828 0.88 +0.3
966,945 + Pf6N2E2_828 0.88 +1.5
967,077 - +0.2
967,142 + +0.8
967,215 + +1.3
967,216 - -0.5
967,216 - +0.2
967,216 - +0.7
967,399 + Pf6N2E2_829 0.23 +0.8
967,399 + Pf6N2E2_829 0.23 +0.7
967,399 + Pf6N2E2_829 0.23 +0.1
967,400 - Pf6N2E2_829 0.23 +0.2
967,400 - Pf6N2E2_829 0.23 +1.3
967,928 + +1.3
967,991 + +0.5
967,992 - +1.0
967,992 - -1.1
967,995 + +0.1
967,996 - +1.5
967,998 + +0.2
967,998 + +0.7
967,999 - +0.6
968,036 + +0.2
968,036 + +0.2
968,036 + -0.4
968,037 - -0.7
968,037 - +0.3
968,037 - -0.8
968,037 - +1.0
968,037 - -0.2
968,044 + +0.4
968,044 + -0.1
968,045 - -0.6
968,045 - +0.2
968,045 - +0.2
968,047 + -0.9
968,047 + +0.3
968,047 + +0.5
968,048 - -0.8
968,144 + +0.6
968,144 + +0.9
968,145 - +0.3
968,145 - +0.8
968,145 - +0.1
968,367 + Pf6N2E2_830 0.25 +0.5
968,367 + Pf6N2E2_830 0.25 -0.4
968,367 + Pf6N2E2_830 0.25 +0.3
968,367 + Pf6N2E2_830 0.25 +0.7
968,367 + Pf6N2E2_830 0.25 +0.2
968,367 + Pf6N2E2_830 0.25 -0.4
968,367 + Pf6N2E2_830 0.25 -1.0
968,367 + Pf6N2E2_830 0.25 -0.1
968,368 - Pf6N2E2_830 0.25 +0.7
968,412 + Pf6N2E2_830 0.29 -0.0
968,413 - Pf6N2E2_830 0.29 +0.6
968,466 + Pf6N2E2_830 0.33 +0.9
968,517 + Pf6N2E2_830 0.37 -1.2
968,517 + Pf6N2E2_830 0.37 +0.8
968,518 - Pf6N2E2_830 0.37 +0.5
968,518 - Pf6N2E2_830 0.37 +0.4
968,518 - Pf6N2E2_830 0.37 +0.8
968,718 + Pf6N2E2_830 0.53 +1.4
968,718 + Pf6N2E2_830 0.53 +0.6
968,718 + Pf6N2E2_830 0.53 -0.1
968,736 + Pf6N2E2_830 0.54 +0.5
968,737 - Pf6N2E2_830 0.54 -0.2
968,737 - Pf6N2E2_830 0.54 +0.2
968,805 + Pf6N2E2_830 0.59 +0.6
968,806 - Pf6N2E2_830 0.60 +0.0
968,806 - Pf6N2E2_830 0.60 +0.4
968,886 + Pf6N2E2_830 0.66 -0.2
968,886 + Pf6N2E2_830 0.66 -0.2
968,887 - Pf6N2E2_830 0.66 -0.2
968,887 - Pf6N2E2_830 0.66 +1.9
968,898 - Pf6N2E2_830 0.67 +1.3

Or see this region's nucleotide sequence