Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4707

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4706 and Pf6N2E2_4707 are separated by 250 nucleotidesPf6N2E2_4707 and Pf6N2E2_4708 are separated by 888 nucleotides Pf6N2E2_4706 - Electron transfer flavoprotein, beta subunit, at 5,439,323 to 5,440,093 _4706 Pf6N2E2_4707 - acetyltransferase, GNAT family, at 5,440,344 to 5,440,910 _4707 Pf6N2E2_4708 - hypothetical protein, at 5,441,799 to 5,442,002 _4708 Position (kb) 5440 5441Strain fitness (log2 ratio) -1 0 1at 5439.569 kb on + strand, within Pf6N2E2_4706at 5439.831 kb on - strand, within Pf6N2E2_4706at 5440.185 kb on - strandat 5440.351 kb on + strandat 5440.351 kb on + strandat 5440.352 kb on - strandat 5440.352 kb on - strandat 5440.380 kb on - strandat 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.491 kb on + strand, within Pf6N2E2_4707at 5440.491 kb on + strand, within Pf6N2E2_4707at 5440.492 kb on - strand, within Pf6N2E2_4707at 5440.575 kb on + strand, within Pf6N2E2_4707at 5440.575 kb on + strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.782 kb on + strand, within Pf6N2E2_4707at 5440.812 kb on + strand, within Pf6N2E2_4707at 5440.812 kb on + strand, within Pf6N2E2_4707at 5440.813 kb on - strand, within Pf6N2E2_4707at 5440.891 kb on - strandat 5440.891 kb on - strandat 5440.891 kb on - strandat 5440.963 kb on + strandat 5440.963 kb on + strandat 5440.963 kb on + strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.968 kb on - strandat 5441.126 kb on + strandat 5441.226 kb on - strandat 5441.226 kb on - strandat 5441.279 kb on - strandat 5441.392 kb on - strandat 5441.392 kb on - strandat 5441.428 kb on - strandat 5441.491 kb on + strandat 5441.491 kb on + strandat 5441.492 kb on - strandat 5441.498 kb on - strandat 5441.498 kb on - strandat 5441.498 kb on - strandat 5441.498 kb on - strandat 5441.498 kb on - strandat 5441.498 kb on - strandat 5441.599 kb on - strandat 5441.606 kb on + strandat 5441.607 kb on - strandat 5441.607 kb on - strandat 5441.614 kb on - strandat 5441.673 kb on - strandat 5441.673 kb on - strandat 5441.673 kb on - strandat 5441.726 kb on + strandat 5441.727 kb on - strandat 5441.727 kb on - strandat 5441.819 kb on + strandat 5441.819 kb on + strandat 5441.820 kb on - strand, within Pf6N2E2_4708at 5441.820 kb on - strand, within Pf6N2E2_4708at 5441.851 kb on - strand, within Pf6N2E2_4708

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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5,439,569 + Pf6N2E2_4706 0.32 +0.2
5,439,831 - Pf6N2E2_4706 0.66 +0.7
5,440,185 - -0.2
5,440,351 + -0.1
5,440,351 + -0.3
5,440,352 - +0.9
5,440,352 - -0.1
5,440,380 - -1.1
5,440,431 + Pf6N2E2_4707 0.15 +0.3
5,440,431 + Pf6N2E2_4707 0.15 +0.0
5,440,431 + Pf6N2E2_4707 0.15 +0.5
5,440,431 + Pf6N2E2_4707 0.15 -0.4
5,440,491 + Pf6N2E2_4707 0.26 -1.0
5,440,491 + Pf6N2E2_4707 0.26 +0.4
5,440,492 - Pf6N2E2_4707 0.26 -0.7
5,440,575 + Pf6N2E2_4707 0.41 +0.2
5,440,575 + Pf6N2E2_4707 0.41 -1.1
5,440,576 - Pf6N2E2_4707 0.41 +0.7
5,440,576 - Pf6N2E2_4707 0.41 +0.6
5,440,576 - Pf6N2E2_4707 0.41 +0.6
5,440,576 - Pf6N2E2_4707 0.41 +0.8
5,440,576 - Pf6N2E2_4707 0.41 -0.0
5,440,576 - Pf6N2E2_4707 0.41 +1.2
5,440,662 + Pf6N2E2_4707 0.56 +0.7
5,440,662 + Pf6N2E2_4707 0.56 +0.5
5,440,662 + Pf6N2E2_4707 0.56 +0.6
5,440,662 + Pf6N2E2_4707 0.56 +0.9
5,440,662 + Pf6N2E2_4707 0.56 +0.1
5,440,662 + Pf6N2E2_4707 0.56 -0.4
5,440,662 + Pf6N2E2_4707 0.56 +0.4
5,440,662 + Pf6N2E2_4707 0.56 +0.2
5,440,662 + Pf6N2E2_4707 0.56 -0.9
5,440,662 + Pf6N2E2_4707 0.56 -0.7
5,440,662 + Pf6N2E2_4707 0.56 +0.4
5,440,662 + Pf6N2E2_4707 0.56 -0.4
5,440,663 - Pf6N2E2_4707 0.56 +0.7
5,440,663 - Pf6N2E2_4707 0.56 +0.3
5,440,663 - Pf6N2E2_4707 0.56 +0.3
5,440,663 - Pf6N2E2_4707 0.56 -0.2
5,440,663 - Pf6N2E2_4707 0.56 +0.0
5,440,663 - Pf6N2E2_4707 0.56 +0.6
5,440,663 - Pf6N2E2_4707 0.56 +0.4
5,440,664 + Pf6N2E2_4707 0.56 -0.7
5,440,664 + Pf6N2E2_4707 0.56 +0.3
5,440,664 + Pf6N2E2_4707 0.56 -0.2
5,440,664 + Pf6N2E2_4707 0.56 +0.3
5,440,664 + Pf6N2E2_4707 0.56 -0.1
5,440,664 + Pf6N2E2_4707 0.56 +0.8
5,440,664 + Pf6N2E2_4707 0.56 -0.4
5,440,665 - Pf6N2E2_4707 0.57 -1.1
5,440,665 - Pf6N2E2_4707 0.57 +0.9
5,440,665 - Pf6N2E2_4707 0.57 -0.7
5,440,665 - Pf6N2E2_4707 0.57 +0.6
5,440,782 + Pf6N2E2_4707 0.77 +0.3
5,440,812 + Pf6N2E2_4707 0.83 +0.7
5,440,812 + Pf6N2E2_4707 0.83 +0.5
5,440,813 - Pf6N2E2_4707 0.83 -1.1
5,440,891 - +0.4
5,440,891 - +0.1
5,440,891 - -0.2
5,440,963 + -0.2
5,440,963 + -0.1
5,440,963 + +0.4
5,440,964 - -0.0
5,440,964 - +1.1
5,440,964 - +0.6
5,440,964 - -0.3
5,440,968 - -1.6
5,441,126 + +1.1
5,441,226 - -0.8
5,441,226 - +0.6
5,441,279 - +0.9
5,441,392 - +0.0
5,441,392 - -0.7
5,441,428 - +1.4
5,441,491 + +0.6
5,441,491 + +0.1
5,441,492 - +0.1
5,441,498 - -0.6
5,441,498 - -0.2
5,441,498 - +0.5
5,441,498 - +0.1
5,441,498 - +0.8
5,441,498 - +0.4
5,441,599 - +0.1
5,441,606 + +0.9
5,441,607 - -0.5
5,441,607 - +0.9
5,441,614 - +0.7
5,441,673 - +0.3
5,441,673 - +0.5
5,441,673 - +0.1
5,441,726 + -0.2
5,441,727 - +0.1
5,441,727 - -0.1
5,441,819 + +0.2
5,441,819 + +1.3
5,441,820 - Pf6N2E2_4708 0.10 -0.5
5,441,820 - Pf6N2E2_4708 0.10 -0.4
5,441,851 - Pf6N2E2_4708 0.25 +0.9

Or see this region's nucleotide sequence