Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_410 and Pf6N2E2_411 are separated by 76 nucleotides Pf6N2E2_411 and Pf6N2E2_412 are separated by 183 nucleotides Pf6N2E2_412 and Pf6N2E2_413 are separated by 32 nucleotides Pf6N2E2_413 and Pf6N2E2_414 are separated by 2 nucleotides Pf6N2E2_414 and Pf6N2E2_415 are separated by 17 nucleotides
Pf6N2E2_410 - hypothetical protein, at 480,118 to 480,660
_410
Pf6N2E2_411 - Nitrogen regulation protein NR(I), at 480,737 to 480,892
_411
Pf6N2E2_412 - hypothetical protein, at 481,076 to 481,336
_412
Pf6N2E2_413 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 481,369 to 482,442
_413
Pf6N2E2_414 - Chemotaxis protein CheD, at 482,445 to 482,921
_414
Pf6N2E2_415 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 482,939 to 483,775
_415
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.719 kb on - strand at 481.061 kb on - strand at 481.354 kb on + strand at 481.355 kb on - strand at 481.355 kb on - strand at 481.664 kb on + strand, within Pf6N2E2_413 at 481.664 kb on + strand, within Pf6N2E2_413 at 482.422 kb on + strand at 482.422 kb on + strand at 482.422 kb on + strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.423 kb on - strand at 482.442 kb on + strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.481 kb on + strand at 482.482 kb on - strand at 482.482 kb on - strand at 482.482 kb on - strand at 482.482 kb on - strand at 482.482 kb on - strand at 482.740 kb on + strand, within Pf6N2E2_414 at 482.741 kb on - strand, within Pf6N2E2_414 at 482.741 kb on - strand, within Pf6N2E2_414 at 482.741 kb on - strand, within Pf6N2E2_414 at 482.743 kb on - strand, within Pf6N2E2_414 at 482.743 kb on - strand, within Pf6N2E2_414 at 482.909 kb on - strand at 482.909 kb on - strand at 482.909 kb on - strand at 483.025 kb on - strand, within Pf6N2E2_415 at 483.090 kb on + strand, within Pf6N2E2_415 at 483.090 kb on + strand, within Pf6N2E2_415 at 483.090 kb on + strand, within Pf6N2E2_415 at 483.090 kb on + strand, within Pf6N2E2_415 at 483.091 kb on - strand, within Pf6N2E2_415 at 483.091 kb on - strand, within Pf6N2E2_415 at 483.091 kb on - strand, within Pf6N2E2_415 at 483.240 kb on + strand, within Pf6N2E2_415 at 483.241 kb on - strand, within Pf6N2E2_415 at 483.315 kb on - strand, within Pf6N2E2_415 at 483.315 kb on - strand, within Pf6N2E2_415 at 483.393 kb on + strand, within Pf6N2E2_415 at 483.394 kb on - strand, within Pf6N2E2_415
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 480,719 - -0.7 481,061 - -1.2 481,354 + +0.1 481,355 - -1.3 481,355 - -0.3 481,664 + Pf6N2E2_413 0.27 +1.2 481,664 + Pf6N2E2_413 0.27 +0.2 482,422 + -1.8 482,422 + +0.2 482,422 + +0.2 482,423 - -1.0 482,423 - +0.5 482,423 - -0.4 482,423 - +1.1 482,423 - +0.2 482,423 - -0.2 482,423 - -1.0 482,423 - -0.6 482,442 + +0.5 482,461 - -0.2 482,461 - +0.2 482,462 + +0.2 482,462 + -0.7 482,462 + -0.2 482,462 + +0.1 482,462 + -0.2 482,462 + +1.3 482,462 + +2.3 482,463 - -0.1 482,463 - +0.2 482,463 - -0.1 482,463 - +0.5 482,463 - -0.1 482,463 - +0.5 482,463 - -0.2 482,463 - -0.6 482,481 + -0.3 482,482 - -0.4 482,482 - -0.2 482,482 - -0.1 482,482 - +0.2 482,482 - +0.7 482,740 + Pf6N2E2_414 0.62 +0.0 482,741 - Pf6N2E2_414 0.62 +1.2 482,741 - Pf6N2E2_414 0.62 -0.7 482,741 - Pf6N2E2_414 0.62 +0.3 482,743 - Pf6N2E2_414 0.62 +0.3 482,743 - Pf6N2E2_414 0.62 +0.5 482,909 - -0.5 482,909 - +0.3 482,909 - -0.6 483,025 - Pf6N2E2_415 0.10 -0.2 483,090 + Pf6N2E2_415 0.18 +0.3 483,090 + Pf6N2E2_415 0.18 +0.4 483,090 + Pf6N2E2_415 0.18 +0.5 483,090 + Pf6N2E2_415 0.18 -0.9 483,091 - Pf6N2E2_415 0.18 +0.9 483,091 - Pf6N2E2_415 0.18 -0.9 483,091 - Pf6N2E2_415 0.18 +0.1 483,240 + Pf6N2E2_415 0.36 +1.3 483,241 - Pf6N2E2_415 0.36 +0.3 483,315 - Pf6N2E2_415 0.45 -1.3 483,315 - Pf6N2E2_415 0.45 +0.3 483,393 + Pf6N2E2_415 0.54 -0.3 483,394 - Pf6N2E2_415 0.54 +0.2
Or see this region's nucleotide sequence