Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5759 and Pf1N1B4_5760 are separated by 3 nucleotides Pf1N1B4_5760 and Pf1N1B4_5761 are separated by 79 nucleotides Pf1N1B4_5761 and Pf1N1B4_5762 are separated by 11 nucleotides Pf1N1B4_5762 and Pf1N1B4_5763 are separated by 43 nucleotides
Pf1N1B4_5759 - Nitric-oxide reductase subunit B (EC 1.7.99.7), at 199,183 to 200,610
_5759
Pf1N1B4_5760 - Nitric-oxide reductase subunit C (EC 1.7.99.7), at 200,614 to 201,222
_5760
Pf1N1B4_5761 - Nitric oxide reductase activation protein NorF, at 201,302 to 201,559
_5761
Pf1N1B4_5762 - Nitric oxide reductase activation protein NorE, at 201,571 to 202,098
_5762
Pf1N1B4_5763 - Nitric oxide reductase activation protein NorQ, at 202,142 to 202,933
_5763
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 199.669 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 200.010 kb on - strand, within Pf1N1B4_5759 at 200.043 kb on - strand, within Pf1N1B4_5759 at 200.144 kb on + strand, within Pf1N1B4_5759 at 200.382 kb on - strand at 200.489 kb on + strand at 200.615 kb on + strand at 200.616 kb on - strand at 200.640 kb on + strand at 200.641 kb on - strand at 200.641 kb on - strand at 200.770 kb on + strand, within Pf1N1B4_5760 at 200.770 kb on + strand, within Pf1N1B4_5760 at 200.770 kb on + strand, within Pf1N1B4_5760 at 201.015 kb on - strand at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.018 kb on + strand, within Pf1N1B4_5760 at 201.087 kb on + strand, within Pf1N1B4_5760 at 201.330 kb on - strand, within Pf1N1B4_5761 at 201.633 kb on - strand, within Pf1N1B4_5762 at 201.730 kb on + strand, within Pf1N1B4_5762 at 201.730 kb on + strand, within Pf1N1B4_5762 at 201.731 kb on - strand, within Pf1N1B4_5762 at 201.846 kb on - strand, within Pf1N1B4_5762 at 201.878 kb on + strand, within Pf1N1B4_5762 at 201.878 kb on + strand, within Pf1N1B4_5762 at 201.879 kb on - strand, within Pf1N1B4_5762
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 199,669 - Pf1N1B4_5759 0.34 -0.5 199,887 - Pf1N1B4_5759 0.49 -0.1 199,887 - Pf1N1B4_5759 0.49 +0.9 199,887 - Pf1N1B4_5759 0.49 -1.2 200,010 - Pf1N1B4_5759 0.58 +0.9 200,043 - Pf1N1B4_5759 0.60 -0.1 200,144 + Pf1N1B4_5759 0.67 +1.5 200,382 - +0.1 200,489 + +0.0 200,615 + -0.5 200,616 - +0.4 200,640 + -0.5 200,641 - +0.1 200,641 - -0.9 200,770 + Pf1N1B4_5760 0.26 -1.5 200,770 + Pf1N1B4_5760 0.26 +0.9 200,770 + Pf1N1B4_5760 0.26 -0.1 201,015 - +0.9 201,015 - Pf1N1B4_5760 0.66 -2.8 201,015 - Pf1N1B4_5760 0.66 -0.5 201,015 - Pf1N1B4_5760 0.66 -1.8 201,018 + Pf1N1B4_5760 0.66 -1.5 201,087 + Pf1N1B4_5760 0.78 +0.5 201,330 - Pf1N1B4_5761 0.11 -0.2 201,633 - Pf1N1B4_5762 0.12 +0.5 201,730 + Pf1N1B4_5762 0.30 -1.8 201,730 + Pf1N1B4_5762 0.30 -0.1 201,731 - Pf1N1B4_5762 0.30 -0.4 201,846 - Pf1N1B4_5762 0.52 -0.1 201,878 + Pf1N1B4_5762 0.58 -0.5 201,878 + Pf1N1B4_5762 0.58 -0.1 201,879 - Pf1N1B4_5762 0.58 +0.1
Or see this region's nucleotide sequence