Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4717

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4716 and Pf1N1B4_4717 are separated by 21 nucleotidesPf1N1B4_4717 and Pf1N1B4_4718 are separated by 207 nucleotidesPf1N1B4_4718 and Pf1N1B4_4719 are separated by 52 nucleotides Pf1N1B4_4716 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 5,212,724 to 5,213,815 _4716 Pf1N1B4_4717 - Agmatinase (EC 3.5.3.11), at 5,213,837 to 5,214,796 _4717 Pf1N1B4_4718 - Transcriptional regulator, DeoR family, at 5,215,004 to 5,215,720 _4718 Pf1N1B4_4719 - Electron transfer flavoprotein, beta subunit, at 5,215,773 to 5,216,114 _4719 Position (kb) 5213 5214 5215Strain fitness (log2 ratio) -2 -1 0 1 2at 5212.883 kb on + strandat 5213.105 kb on + strand, within Pf1N1B4_4716at 5213.105 kb on + strand, within Pf1N1B4_4716at 5213.207 kb on + strand, within Pf1N1B4_4716at 5213.282 kb on + strand, within Pf1N1B4_4716at 5213.283 kb on - strand, within Pf1N1B4_4716at 5213.352 kb on + strand, within Pf1N1B4_4716at 5213.432 kb on + strand, within Pf1N1B4_4716at 5213.629 kb on + strandat 5213.708 kb on + strandat 5213.831 kb on + strandat 5213.831 kb on + strandat 5213.831 kb on + strandat 5213.832 kb on - strandat 5213.832 kb on - strandat 5213.832 kb on - strandat 5213.909 kb on + strandat 5213.909 kb on + strandat 5213.909 kb on + strandat 5213.910 kb on - strandat 5213.910 kb on - strandat 5214.545 kb on + strand, within Pf1N1B4_4717at 5214.721 kb on + strandat 5214.721 kb on + strandat 5214.722 kb on - strandat 5214.767 kb on + strandat 5214.767 kb on + strandat 5214.768 kb on - strandat 5214.768 kb on - strandat 5214.867 kb on - strandat 5214.867 kb on - strandat 5214.967 kb on - strandat 5215.036 kb on - strandat 5215.036 kb on - strandat 5215.036 kb on - strandat 5215.179 kb on - strandat 5215.179 kb on - strand, within Pf1N1B4_4718at 5215.179 kb on - strand, within Pf1N1B4_4718

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,212,883 + +2.0
5,213,105 + Pf1N1B4_4716 0.35 -0.7
5,213,105 + Pf1N1B4_4716 0.35 -1.9
5,213,207 + Pf1N1B4_4716 0.44 +1.3
5,213,282 + Pf1N1B4_4716 0.51 +0.9
5,213,283 - Pf1N1B4_4716 0.51 -1.4
5,213,352 + Pf1N1B4_4716 0.58 -1.2
5,213,432 + Pf1N1B4_4716 0.65 -0.8
5,213,629 + +0.7
5,213,708 + -0.3
5,213,831 + -0.1
5,213,831 + -2.1
5,213,831 + -0.7
5,213,832 - +0.7
5,213,832 - -0.3
5,213,832 - -1.2
5,213,909 + +1.7
5,213,909 + +0.3
5,213,909 + +2.5
5,213,910 - +0.4
5,213,910 - +0.3
5,214,545 + Pf1N1B4_4717 0.74 +0.4
5,214,721 + -1.3
5,214,721 + -1.9
5,214,722 - +0.9
5,214,767 + -0.3
5,214,767 + -1.3
5,214,768 - -0.6
5,214,768 - +0.2
5,214,867 - -0.2
5,214,867 - +0.4
5,214,967 - -0.7
5,215,036 - +0.8
5,215,036 - +0.3
5,215,036 - +1.7
5,215,179 - +1.7
5,215,179 - Pf1N1B4_4718 0.24 -0.1
5,215,179 - Pf1N1B4_4718 0.24 +2.4

Or see this region's nucleotide sequence