Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4007

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4006 and Pf1N1B4_4007 are separated by 111 nucleotidesPf1N1B4_4007 and Pf1N1B4_4008 are separated by 367 nucleotides Pf1N1B4_4006 - Cysteinyl-tRNA synthetase (EC 6.1.1.16), at 4,455,762 to 4,457,144 _4006 Pf1N1B4_4007 - sigma-54 dependent transcriptional regulator, at 4,457,256 to 4,459,106 _4007 Pf1N1B4_4008 - Various polyols ABC transporter, ATP-binding component, at 4,459,474 to 4,460,568 _4008 Position (kb) 4457 4458 4459 4460Strain fitness (log2 ratio) -2 -1 0 1 2at 4457.285 kb on - strandat 4457.285 kb on - strandat 4457.285 kb on - strandat 4457.285 kb on - strandat 4457.690 kb on - strandat 4457.690 kb on - strand, within Pf1N1B4_4007at 4457.959 kb on - strand, within Pf1N1B4_4007at 4457.959 kb on - strand, within Pf1N1B4_4007at 4458.605 kb on - strand, within Pf1N1B4_4007at 4458.605 kb on - strand, within Pf1N1B4_4007at 4458.605 kb on - strand, within Pf1N1B4_4007at 4458.605 kb on - strand, within Pf1N1B4_4007at 4459.133 kb on - strandat 4459.213 kb on - strandat 4459.219 kb on - strandat 4459.352 kb on + strandat 4459.353 kb on - strandat 4459.459 kb on + strandat 4459.711 kb on + strand, within Pf1N1B4_4008at 4459.712 kb on - strand, within Pf1N1B4_4008at 4459.966 kb on + strand, within Pf1N1B4_4008at 4460.032 kb on - strand, within Pf1N1B4_4008at 4460.035 kb on + strand, within Pf1N1B4_4008at 4460.036 kb on - strand, within Pf1N1B4_4008at 4460.036 kb on - strand, within Pf1N1B4_4008at 4460.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,457,285 - +2.0
4,457,285 - +1.1
4,457,285 - +1.0
4,457,285 - -0.0
4,457,690 - +1.0
4,457,690 - Pf1N1B4_4007 0.23 +0.4
4,457,959 - Pf1N1B4_4007 0.38 -1.4
4,457,959 - Pf1N1B4_4007 0.38 -0.8
4,458,605 - Pf1N1B4_4007 0.73 -1.2
4,458,605 - Pf1N1B4_4007 0.73 +0.7
4,458,605 - Pf1N1B4_4007 0.73 -1.4
4,458,605 - Pf1N1B4_4007 0.73 -1.6
4,459,133 - -0.5
4,459,213 - -0.7
4,459,219 - +1.0
4,459,352 + -0.0
4,459,353 - +0.5
4,459,459 + +0.8
4,459,711 + Pf1N1B4_4008 0.22 +1.5
4,459,712 - Pf1N1B4_4008 0.22 -1.9
4,459,966 + Pf1N1B4_4008 0.45 +0.4
4,460,032 - Pf1N1B4_4008 0.51 +1.1
4,460,035 + Pf1N1B4_4008 0.51 +1.0
4,460,036 - Pf1N1B4_4008 0.51 +0.1
4,460,036 - Pf1N1B4_4008 0.51 -0.5
4,460,036 - +2.5

Or see this region's nucleotide sequence