Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2516 and Pf1N1B4_2517 are separated by 23 nucleotides Pf1N1B4_2517 and Pf1N1B4_2518 are separated by 74 nucleotides Pf1N1B4_2518 and Pf1N1B4_2519 overlap by 10 nucleotides
Pf1N1B4_2516 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 2,855,695 to 2,856,720
_2516
Pf1N1B4_2517 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 2,856,744 to 2,857,313
_2517
Pf1N1B4_2518 - Dihydroneopterin aldolase (EC 4.1.2.25), at 2,857,388 to 2,857,744
_2518
Pf1N1B4_2519 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 2,857,735 to 2,858,253
_2519
Position (kb)
2856
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2856.741 kb on + strand at 2856.746 kb on - strand at 2856.780 kb on + strand at 2856.780 kb on + strand at 2856.780 kb on + strand at 2856.781 kb on - strand at 2856.834 kb on + strand, within Pf1N1B4_2517 at 2856.919 kb on + strand, within Pf1N1B4_2517 at 2856.919 kb on + strand, within Pf1N1B4_2517 at 2856.919 kb on + strand, within Pf1N1B4_2517 at 2856.920 kb on - strand, within Pf1N1B4_2517 at 2856.920 kb on - strand, within Pf1N1B4_2517 at 2856.967 kb on + strand, within Pf1N1B4_2517 at 2857.027 kb on + strand, within Pf1N1B4_2517 at 2857.083 kb on + strand, within Pf1N1B4_2517 at 2857.083 kb on + strand, within Pf1N1B4_2517 at 2857.083 kb on + strand, within Pf1N1B4_2517 at 2857.095 kb on + strand, within Pf1N1B4_2517 at 2857.096 kb on - strand, within Pf1N1B4_2517 at 2857.316 kb on + strand at 2857.316 kb on + strand at 2857.316 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2857.320 kb on + strand at 2858.288 kb on + strand at 2858.288 kb on + strand at 2858.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,856,741 + -1.4 2,856,746 - +1.6 2,856,780 + -0.6 2,856,780 + -0.7 2,856,780 + +1.6 2,856,781 - +1.0 2,856,834 + Pf1N1B4_2517 0.16 -1.4 2,856,919 + Pf1N1B4_2517 0.31 +1.6 2,856,919 + Pf1N1B4_2517 0.31 -0.4 2,856,919 + Pf1N1B4_2517 0.31 -0.2 2,856,920 - Pf1N1B4_2517 0.31 -0.8 2,856,920 - Pf1N1B4_2517 0.31 -1.2 2,856,967 + Pf1N1B4_2517 0.39 -0.5 2,857,027 + Pf1N1B4_2517 0.50 -0.5 2,857,083 + Pf1N1B4_2517 0.59 -1.0 2,857,083 + Pf1N1B4_2517 0.59 -0.8 2,857,083 + Pf1N1B4_2517 0.59 +0.2 2,857,095 + Pf1N1B4_2517 0.62 -2.1 2,857,096 - Pf1N1B4_2517 0.62 +0.2 2,857,316 + -0.8 2,857,316 + +1.1 2,857,316 + -1.5 2,857,320 + -0.2 2,857,320 + +1.8 2,857,320 + +1.0 2,857,320 + +0.5 2,857,320 + -0.4 2,857,320 + +1.4 2,857,320 + -0.3 2,858,288 + +0.6 2,858,288 + -0.3 2,858,313 + +0.3
Or see this region's nucleotide sequence