Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1484 and Pf1N1B4_1485 overlap by 1 nucleotides Pf1N1B4_1485 and Pf1N1B4_1486 overlap by 11 nucleotides Pf1N1B4_1486 and Pf1N1B4_1487 are separated by 375 nucleotides
Pf1N1B4_1484 - Rhs family protein, at 1,705,867 to 1,710,675
_1484
Pf1N1B4_1485 - FIG00963848: hypothetical protein, at 1,710,675 to 1,711,412
_1485
Pf1N1B4_1486 - VgrG protein, at 1,711,402 to 1,713,420
_1486
Pf1N1B4_1487 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 1,713,796 to 1,715,280
_1487
Position (kb)
1711
1712
1713
1714 Strain fitness (log2 ratio)
-2
-1
0
1 at 1710.405 kb on - strand at 1710.428 kb on - strand at 1710.508 kb on - strand at 1710.614 kb on + strand at 1710.616 kb on + strand at 1710.616 kb on + strand at 1710.698 kb on - strand at 1710.793 kb on + strand, within Pf1N1B4_1485 at 1710.984 kb on + strand, within Pf1N1B4_1485 at 1711.030 kb on + strand, within Pf1N1B4_1485 at 1711.030 kb on + strand, within Pf1N1B4_1485 at 1711.031 kb on - strand, within Pf1N1B4_1485 at 1711.250 kb on + strand, within Pf1N1B4_1485 at 1711.898 kb on - strand, within Pf1N1B4_1486 at 1711.977 kb on - strand, within Pf1N1B4_1486 at 1711.995 kb on + strand, within Pf1N1B4_1486 at 1712.527 kb on + strand, within Pf1N1B4_1486 at 1712.527 kb on + strand, within Pf1N1B4_1486 at 1712.528 kb on - strand, within Pf1N1B4_1486 at 1712.528 kb on - strand, within Pf1N1B4_1486 at 1712.975 kb on + strand, within Pf1N1B4_1486 at 1713.087 kb on + strand, within Pf1N1B4_1486 at 1713.087 kb on + strand, within Pf1N1B4_1486 at 1713.111 kb on + strand, within Pf1N1B4_1486 at 1713.125 kb on + strand, within Pf1N1B4_1486 at 1713.125 kb on + strand, within Pf1N1B4_1486 at 1713.125 kb on + strand, within Pf1N1B4_1486 at 1713.125 kb on + strand, within Pf1N1B4_1486 at 1713.352 kb on + strand at 1713.353 kb on - strand at 1713.353 kb on - strand at 1713.353 kb on - strand at 1713.353 kb on - strand at 1713.353 kb on - strand at 1713.502 kb on + strand at 1713.509 kb on - strand at 1713.552 kb on - strand at 1713.627 kb on + strand at 1713.627 kb on + strand at 1713.627 kb on + strand at 1713.627 kb on + strand at 1713.627 kb on + strand at 1713.628 kb on - strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.629 kb on + strand at 1713.630 kb on - strand at 1713.630 kb on - strand at 1713.711 kb on - strand at 1713.763 kb on + strand at 1713.764 kb on - strand at 1713.882 kb on - strand at 1713.882 kb on - strand at 1713.882 kb on - strand at 1713.882 kb on - strand at 1714.074 kb on - strand, within Pf1N1B4_1487 at 1714.074 kb on - strand, within Pf1N1B4_1487 at 1714.091 kb on - strand, within Pf1N1B4_1487 at 1714.208 kb on + strand at 1714.209 kb on - strand, within Pf1N1B4_1487 at 1714.209 kb on - strand, within Pf1N1B4_1487 at 1714.294 kb on + strand, within Pf1N1B4_1487 at 1714.397 kb on + strand, within Pf1N1B4_1487 at 1714.398 kb on - strand, within Pf1N1B4_1487 at 1714.398 kb on - strand, within Pf1N1B4_1487 at 1714.398 kb on - strand, within Pf1N1B4_1487 at 1714.398 kb on - strand, within Pf1N1B4_1487 at 1714.398 kb on - strand, within Pf1N1B4_1487
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,710,405 - -1.4 1,710,428 - +0.5 1,710,508 - -0.2 1,710,614 + -1.7 1,710,616 + +0.1 1,710,616 + -0.1 1,710,698 - -1.3 1,710,793 + Pf1N1B4_1485 0.16 +1.6 1,710,984 + Pf1N1B4_1485 0.42 +0.3 1,711,030 + Pf1N1B4_1485 0.48 -0.4 1,711,030 + Pf1N1B4_1485 0.48 +1.5 1,711,031 - Pf1N1B4_1485 0.48 -0.1 1,711,250 + Pf1N1B4_1485 0.78 -0.2 1,711,898 - Pf1N1B4_1486 0.25 +0.1 1,711,977 - Pf1N1B4_1486 0.28 +0.3 1,711,995 + Pf1N1B4_1486 0.29 -0.7 1,712,527 + Pf1N1B4_1486 0.56 -1.4 1,712,527 + Pf1N1B4_1486 0.56 -0.7 1,712,528 - Pf1N1B4_1486 0.56 -1.8 1,712,528 - Pf1N1B4_1486 0.56 +0.6 1,712,975 + Pf1N1B4_1486 0.78 -1.8 1,713,087 + Pf1N1B4_1486 0.83 -0.9 1,713,087 + Pf1N1B4_1486 0.83 -1.1 1,713,111 + Pf1N1B4_1486 0.85 -0.4 1,713,125 + Pf1N1B4_1486 0.85 -0.0 1,713,125 + Pf1N1B4_1486 0.85 -0.7 1,713,125 + Pf1N1B4_1486 0.85 +0.5 1,713,125 + Pf1N1B4_1486 0.85 -1.8 1,713,352 + -0.2 1,713,353 - +0.6 1,713,353 - -1.2 1,713,353 - +0.3 1,713,353 - +0.4 1,713,353 - -1.8 1,713,502 + +0.1 1,713,509 - +0.6 1,713,552 - -0.6 1,713,627 + -0.9 1,713,627 + +0.1 1,713,627 + -0.4 1,713,627 + +1.0 1,713,627 + -0.6 1,713,628 - -1.7 1,713,629 + -1.0 1,713,629 + +0.1 1,713,629 + +0.1 1,713,629 + -0.7 1,713,629 + -0.4 1,713,629 + +0.1 1,713,629 + +0.1 1,713,629 + -0.4 1,713,629 + -0.0 1,713,629 + +0.2 1,713,629 + -0.3 1,713,629 + -0.7 1,713,630 - +0.3 1,713,630 - +1.2 1,713,711 - +0.6 1,713,763 + -1.8 1,713,764 - +0.8 1,713,882 - +0.5 1,713,882 - +0.4 1,713,882 - +0.6 1,713,882 - +0.1 1,714,074 - Pf1N1B4_1487 0.19 -1.2 1,714,074 - Pf1N1B4_1487 0.19 +0.1 1,714,091 - Pf1N1B4_1487 0.20 -0.6 1,714,208 + +0.6 1,714,209 - Pf1N1B4_1487 0.28 +0.8 1,714,209 - Pf1N1B4_1487 0.28 -0.7 1,714,294 + Pf1N1B4_1487 0.34 +1.1 1,714,397 + Pf1N1B4_1487 0.40 -0.2 1,714,398 - Pf1N1B4_1487 0.41 -0.7 1,714,398 - Pf1N1B4_1487 0.41 +0.1 1,714,398 - Pf1N1B4_1487 0.41 -1.6 1,714,398 - Pf1N1B4_1487 0.41 +1.1 1,714,398 - Pf1N1B4_1487 0.41 +0.7
Or see this region's nucleotide sequence