Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1486

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1484 and Pf1N1B4_1485 overlap by 1 nucleotidesPf1N1B4_1485 and Pf1N1B4_1486 overlap by 11 nucleotidesPf1N1B4_1486 and Pf1N1B4_1487 are separated by 375 nucleotides Pf1N1B4_1484 - Rhs family protein, at 1,705,867 to 1,710,675 _1484 Pf1N1B4_1485 - FIG00963848: hypothetical protein, at 1,710,675 to 1,711,412 _1485 Pf1N1B4_1486 - VgrG protein, at 1,711,402 to 1,713,420 _1486 Pf1N1B4_1487 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 1,713,796 to 1,715,280 _1487 Position (kb) 1711 1712 1713 1714Strain fitness (log2 ratio) -2 -1 0 1at 1710.405 kb on - strandat 1710.428 kb on - strandat 1710.508 kb on - strandat 1710.614 kb on + strandat 1710.616 kb on + strandat 1710.616 kb on + strandat 1710.698 kb on - strandat 1710.793 kb on + strand, within Pf1N1B4_1485at 1710.984 kb on + strand, within Pf1N1B4_1485at 1711.030 kb on + strand, within Pf1N1B4_1485at 1711.030 kb on + strand, within Pf1N1B4_1485at 1711.031 kb on - strand, within Pf1N1B4_1485at 1711.250 kb on + strand, within Pf1N1B4_1485at 1711.898 kb on - strand, within Pf1N1B4_1486at 1711.977 kb on - strand, within Pf1N1B4_1486at 1711.995 kb on + strand, within Pf1N1B4_1486at 1712.527 kb on + strand, within Pf1N1B4_1486at 1712.527 kb on + strand, within Pf1N1B4_1486at 1712.528 kb on - strand, within Pf1N1B4_1486at 1712.528 kb on - strand, within Pf1N1B4_1486at 1712.975 kb on + strand, within Pf1N1B4_1486at 1713.087 kb on + strand, within Pf1N1B4_1486at 1713.087 kb on + strand, within Pf1N1B4_1486at 1713.111 kb on + strand, within Pf1N1B4_1486at 1713.125 kb on + strand, within Pf1N1B4_1486at 1713.125 kb on + strand, within Pf1N1B4_1486at 1713.125 kb on + strand, within Pf1N1B4_1486at 1713.125 kb on + strand, within Pf1N1B4_1486at 1713.352 kb on + strandat 1713.353 kb on - strandat 1713.353 kb on - strandat 1713.353 kb on - strandat 1713.353 kb on - strandat 1713.353 kb on - strandat 1713.502 kb on + strandat 1713.509 kb on - strandat 1713.552 kb on - strandat 1713.627 kb on + strandat 1713.627 kb on + strandat 1713.627 kb on + strandat 1713.627 kb on + strandat 1713.627 kb on + strandat 1713.628 kb on - strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.629 kb on + strandat 1713.630 kb on - strandat 1713.630 kb on - strandat 1713.711 kb on - strandat 1713.763 kb on + strandat 1713.764 kb on - strandat 1713.882 kb on - strandat 1713.882 kb on - strandat 1713.882 kb on - strandat 1713.882 kb on - strandat 1714.074 kb on - strand, within Pf1N1B4_1487at 1714.074 kb on - strand, within Pf1N1B4_1487at 1714.091 kb on - strand, within Pf1N1B4_1487at 1714.208 kb on + strandat 1714.209 kb on - strand, within Pf1N1B4_1487at 1714.209 kb on - strand, within Pf1N1B4_1487at 1714.294 kb on + strand, within Pf1N1B4_1487at 1714.397 kb on + strand, within Pf1N1B4_1487at 1714.398 kb on - strand, within Pf1N1B4_1487at 1714.398 kb on - strand, within Pf1N1B4_1487at 1714.398 kb on - strand, within Pf1N1B4_1487at 1714.398 kb on - strand, within Pf1N1B4_1487at 1714.398 kb on - strand, within Pf1N1B4_1487

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,710,405 - -1.4
1,710,428 - +0.5
1,710,508 - -0.2
1,710,614 + -1.7
1,710,616 + +0.1
1,710,616 + -0.1
1,710,698 - -1.3
1,710,793 + Pf1N1B4_1485 0.16 +1.6
1,710,984 + Pf1N1B4_1485 0.42 +0.3
1,711,030 + Pf1N1B4_1485 0.48 -0.4
1,711,030 + Pf1N1B4_1485 0.48 +1.5
1,711,031 - Pf1N1B4_1485 0.48 -0.1
1,711,250 + Pf1N1B4_1485 0.78 -0.2
1,711,898 - Pf1N1B4_1486 0.25 +0.1
1,711,977 - Pf1N1B4_1486 0.28 +0.3
1,711,995 + Pf1N1B4_1486 0.29 -0.7
1,712,527 + Pf1N1B4_1486 0.56 -1.4
1,712,527 + Pf1N1B4_1486 0.56 -0.7
1,712,528 - Pf1N1B4_1486 0.56 -1.8
1,712,528 - Pf1N1B4_1486 0.56 +0.6
1,712,975 + Pf1N1B4_1486 0.78 -1.8
1,713,087 + Pf1N1B4_1486 0.83 -0.9
1,713,087 + Pf1N1B4_1486 0.83 -1.1
1,713,111 + Pf1N1B4_1486 0.85 -0.4
1,713,125 + Pf1N1B4_1486 0.85 -0.0
1,713,125 + Pf1N1B4_1486 0.85 -0.7
1,713,125 + Pf1N1B4_1486 0.85 +0.5
1,713,125 + Pf1N1B4_1486 0.85 -1.8
1,713,352 + -0.2
1,713,353 - +0.6
1,713,353 - -1.2
1,713,353 - +0.3
1,713,353 - +0.4
1,713,353 - -1.8
1,713,502 + +0.1
1,713,509 - +0.6
1,713,552 - -0.6
1,713,627 + -0.9
1,713,627 + +0.1
1,713,627 + -0.4
1,713,627 + +1.0
1,713,627 + -0.6
1,713,628 - -1.7
1,713,629 + -1.0
1,713,629 + +0.1
1,713,629 + +0.1
1,713,629 + -0.7
1,713,629 + -0.4
1,713,629 + +0.1
1,713,629 + +0.1
1,713,629 + -0.4
1,713,629 + -0.0
1,713,629 + +0.2
1,713,629 + -0.3
1,713,629 + -0.7
1,713,630 - +0.3
1,713,630 - +1.2
1,713,711 - +0.6
1,713,763 + -1.8
1,713,764 - +0.8
1,713,882 - +0.5
1,713,882 - +0.4
1,713,882 - +0.6
1,713,882 - +0.1
1,714,074 - Pf1N1B4_1487 0.19 -1.2
1,714,074 - Pf1N1B4_1487 0.19 +0.1
1,714,091 - Pf1N1B4_1487 0.20 -0.6
1,714,208 + +0.6
1,714,209 - Pf1N1B4_1487 0.28 +0.8
1,714,209 - Pf1N1B4_1487 0.28 -0.7
1,714,294 + Pf1N1B4_1487 0.34 +1.1
1,714,397 + Pf1N1B4_1487 0.40 -0.2
1,714,398 - Pf1N1B4_1487 0.41 -0.7
1,714,398 - Pf1N1B4_1487 0.41 +0.1
1,714,398 - Pf1N1B4_1487 0.41 -1.6
1,714,398 - Pf1N1B4_1487 0.41 +1.1
1,714,398 - Pf1N1B4_1487 0.41 +0.7

Or see this region's nucleotide sequence