Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19530 and HSERO_RS19535 are separated by 77 nucleotides HSERO_RS19535 and HSERO_RS19540 are separated by 0 nucleotides HSERO_RS19540 and HSERO_RS19545 overlap by 4 nucleotides
HSERO_RS19530: HSERO_RS19530 - HPr kinase, at 4,476,453 to 4,477,391
_RS19530
HSERO_RS19535: HSERO_RS19535 - nucleotide-binding protein, at 4,477,469 to 4,478,323
_RS19535
HSERO_RS19540: HSERO_RS19540 - adenine glycosylase, at 4,478,324 to 4,479,460
_RS19540
HSERO_RS19545: HSERO_RS19545 - formamidopyrimidine-DNA glycosylase, at 4,479,457 to 4,480,278
_RS19545
Position (kb) 4478
4479
4480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4477.422 kb on + strand at 4477.483 kb on + strand at 4477.737 kb on + strand, within HSERO_RS19535 at 4477.902 kb on - strand, within HSERO_RS19535 at 4478.223 kb on - strand, within HSERO_RS19535 at 4478.358 kb on + strand at 4478.548 kb on - strand, within HSERO_RS19540 at 4478.553 kb on + strand, within HSERO_RS19540 at 4478.855 kb on + strand, within HSERO_RS19540 at 4478.867 kb on + strand, within HSERO_RS19540 at 4479.187 kb on - strand, within HSERO_RS19540 at 4479.228 kb on - strand, within HSERO_RS19540 at 4479.240 kb on - strand, within HSERO_RS19540 at 4479.264 kb on - strand, within HSERO_RS19540 at 4479.291 kb on + strand, within HSERO_RS19540 at 4479.364 kb on + strand at 4479.406 kb on + strand at 4479.453 kb on + strand at 4479.547 kb on - strand, within HSERO_RS19545 at 4479.672 kb on - strand at 4479.675 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.884 kb on - strand, within HSERO_RS19545 at 4479.922 kb on - strand, within HSERO_RS19545 at 4479.937 kb on - strand, within HSERO_RS19545 at 4479.957 kb on + strand, within HSERO_RS19545 at 4480.060 kb on - strand, within HSERO_RS19545 at 4480.083 kb on + strand, within HSERO_RS19545 at 4480.172 kb on + strand, within HSERO_RS19545 at 4480.220 kb on + strand at 4480.221 kb on + strand at 4480.358 kb on + strand at 4480.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 4,477,422 + +0.2 4,477,483 + -0.2 4,477,737 + HSERO_RS19535 0.31 -0.8 4,477,902 - HSERO_RS19535 0.51 -0.4 4,478,223 - HSERO_RS19535 0.88 +0.5 4,478,358 + +2.5 4,478,548 - HSERO_RS19540 0.20 +1.2 4,478,553 + HSERO_RS19540 0.20 +0.9 4,478,855 + HSERO_RS19540 0.47 +1.3 4,478,867 + HSERO_RS19540 0.48 -0.3 4,479,187 - HSERO_RS19540 0.76 -2.9 4,479,228 - HSERO_RS19540 0.80 +0.8 4,479,240 - HSERO_RS19540 0.81 +0.7 4,479,264 - HSERO_RS19540 0.83 +1.4 4,479,291 + HSERO_RS19540 0.85 -0.0 4,479,364 + -1.2 4,479,406 + -0.5 4,479,453 + +2.5 4,479,547 - HSERO_RS19545 0.11 +1.9 4,479,672 - +0.3 4,479,675 + HSERO_RS19545 0.27 -1.6 4,479,876 + HSERO_RS19545 0.51 +0.8 4,479,876 + HSERO_RS19545 0.51 +0.3 4,479,876 + HSERO_RS19545 0.51 +0.0 4,479,884 - HSERO_RS19545 0.52 +0.6 4,479,922 - HSERO_RS19545 0.57 -1.2 4,479,937 - HSERO_RS19545 0.58 -0.0 4,479,957 + HSERO_RS19545 0.61 +0.3 4,480,060 - HSERO_RS19545 0.73 +0.6 4,480,083 + HSERO_RS19545 0.76 -0.2 4,480,172 + HSERO_RS19545 0.87 -0.4 4,480,220 + -0.3 4,480,221 + -1.1 4,480,358 + -1.9 4,480,408 - +1.1
Or see this region's nucleotide sequence