Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06415 and HSERO_RS06420 are separated by 155 nucleotides HSERO_RS06420 and HSERO_RS06425 are separated by 44 nucleotides HSERO_RS06425 and HSERO_RS06430 are separated by 45 nucleotides HSERO_RS06430 and HSERO_RS06435 are separated by 59 nucleotides
HSERO_RS06415: HSERO_RS06415 - AraC family transcriptional regulator, at 1,448,988 to 1,449,962
_RS06415
HSERO_RS06420: HSERO_RS06420 - hypothetical protein, at 1,450,118 to 1,450,393
_RS06420
HSERO_RS06425: HSERO_RS06425 - amine oxidase N, at 1,450,438 to 1,451,790
_RS06425
HSERO_RS06430: HSERO_RS06430 - hypothetical protein, at 1,451,836 to 1,452,222
_RS06430
HSERO_RS06435: HSERO_RS06435 - amino-acid transporter transmembrane protein, at 1,452,282 to 1,453,733
_RS06435
Position (kb) 1450
1451
1452 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1449.555 kb on - strand, within HSERO_RS06415 at 1449.714 kb on + strand, within HSERO_RS06415 at 1450.003 kb on - strand at 1450.046 kb on + strand at 1450.267 kb on + strand, within HSERO_RS06420 at 1450.321 kb on + strand, within HSERO_RS06420 at 1450.389 kb on + strand at 1450.407 kb on - strand at 1450.416 kb on + strand at 1450.424 kb on - strand at 1450.493 kb on + strand at 1450.554 kb on + strand at 1450.695 kb on + strand, within HSERO_RS06425 at 1450.708 kb on - strand, within HSERO_RS06425 at 1450.799 kb on + strand, within HSERO_RS06425 at 1450.809 kb on + strand, within HSERO_RS06425 at 1451.073 kb on + strand, within HSERO_RS06425 at 1451.165 kb on - strand, within HSERO_RS06425 at 1451.173 kb on + strand, within HSERO_RS06425 at 1451.255 kb on - strand, within HSERO_RS06425 at 1451.272 kb on - strand, within HSERO_RS06425 at 1451.429 kb on - strand, within HSERO_RS06425 at 1451.692 kb on + strand at 1451.714 kb on + strand at 1451.759 kb on + strand at 1451.785 kb on + strand at 1451.889 kb on - strand, within HSERO_RS06430 at 1452.331 kb on - strand at 1452.415 kb on + strand at 1452.423 kb on - strand at 1452.573 kb on + strand, within HSERO_RS06435 at 1452.581 kb on - strand, within HSERO_RS06435 at 1452.725 kb on - strand, within HSERO_RS06435 at 1452.757 kb on + strand, within HSERO_RS06435
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,449,555 - HSERO_RS06415 0.58 +0.6 1,449,714 + HSERO_RS06415 0.74 +0.4 1,450,003 - -0.1 1,450,046 + +0.5 1,450,267 + HSERO_RS06420 0.54 +0.8 1,450,321 + HSERO_RS06420 0.74 +1.6 1,450,389 + -0.8 1,450,407 - +0.8 1,450,416 + -0.0 1,450,424 - -0.3 1,450,493 + +0.5 1,450,554 + -0.2 1,450,695 + HSERO_RS06425 0.19 -2.1 1,450,708 - HSERO_RS06425 0.20 +0.9 1,450,799 + HSERO_RS06425 0.27 -0.2 1,450,809 + HSERO_RS06425 0.27 +0.3 1,451,073 + HSERO_RS06425 0.47 +0.2 1,451,165 - HSERO_RS06425 0.54 -0.0 1,451,173 + HSERO_RS06425 0.54 -0.9 1,451,255 - HSERO_RS06425 0.60 +0.3 1,451,272 - HSERO_RS06425 0.62 -0.4 1,451,429 - HSERO_RS06425 0.73 +0.1 1,451,692 + +0.0 1,451,714 + +0.0 1,451,759 + +0.2 1,451,785 + +0.2 1,451,889 - HSERO_RS06430 0.14 +0.6 1,452,331 - +2.0 1,452,415 + +1.5 1,452,423 - +0.3 1,452,573 + HSERO_RS06435 0.20 -0.7 1,452,581 - HSERO_RS06435 0.21 -0.6 1,452,725 - HSERO_RS06435 0.31 -0.6 1,452,757 + HSERO_RS06435 0.33 +0.7
Or see this region's nucleotide sequence