Experiment: D-Galactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17695 and HMPREF1058_RS17690 are separated by 132 nucleotides HMPREF1058_RS17690 and HMPREF1058_RS17685 are separated by 204 nucleotides HMPREF1058_RS17685 and HMPREF1058_RS17680 are separated by 6 nucleotides
HMPREF1058_RS17695: HMPREF1058_RS17695 - YihY/virulence factor BrkB family protein, at 366,940 to 368,259
_RS17695
HMPREF1058_RS17690: HMPREF1058_RS17690 - riboflavin synthase, at 368,392 to 368,994
_RS17690
HMPREF1058_RS17685: HMPREF1058_RS17685 - helix-turn-helix transcriptional regulator, at 369,199 to 369,774
_RS17685
HMPREF1058_RS17680: HMPREF1058_RS17680 - AMP-binding protein, at 369,781 to 371,433
_RS17680
Position (kb) 368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 367.452 kb on - strand, within HMPREF1058_RS17695 at 367.456 kb on - strand, within HMPREF1058_RS17695 at 367.456 kb on - strand at 367.485 kb on + strand, within HMPREF1058_RS17695 at 367.606 kb on - strand, within HMPREF1058_RS17695 at 367.634 kb on - strand, within HMPREF1058_RS17695 at 367.634 kb on - strand, within HMPREF1058_RS17695 at 367.691 kb on - strand, within HMPREF1058_RS17695 at 367.706 kb on + strand, within HMPREF1058_RS17695 at 367.720 kb on + strand, within HMPREF1058_RS17695 at 367.732 kb on + strand, within HMPREF1058_RS17695 at 367.732 kb on + strand, within HMPREF1058_RS17695 at 367.733 kb on - strand, within HMPREF1058_RS17695 at 367.755 kb on + strand, within HMPREF1058_RS17695 at 367.756 kb on - strand, within HMPREF1058_RS17695 at 367.816 kb on + strand, within HMPREF1058_RS17695 at 367.866 kb on + strand, within HMPREF1058_RS17695 at 368.011 kb on + strand, within HMPREF1058_RS17695 at 368.038 kb on + strand, within HMPREF1058_RS17695 at 368.050 kb on - strand, within HMPREF1058_RS17695 at 368.090 kb on + strand, within HMPREF1058_RS17695 at 368.090 kb on + strand, within HMPREF1058_RS17695 at 368.095 kb on - strand, within HMPREF1058_RS17695 at 368.223 kb on + strand at 368.223 kb on + strand at 368.240 kb on + strand at 368.240 kb on + strand at 368.240 kb on + strand at 369.037 kb on - strand at 369.157 kb on - strand at 369.159 kb on - strand at 369.305 kb on + strand, within HMPREF1058_RS17685 at 369.321 kb on + strand, within HMPREF1058_RS17685 at 369.322 kb on - strand, within HMPREF1058_RS17685 at 369.326 kb on + strand, within HMPREF1058_RS17685 at 369.492 kb on + strand, within HMPREF1058_RS17685 at 369.493 kb on - strand, within HMPREF1058_RS17685 at 369.616 kb on + strand, within HMPREF1058_RS17685 at 369.617 kb on - strand, within HMPREF1058_RS17685 at 369.642 kb on - strand, within HMPREF1058_RS17685 at 369.684 kb on + strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.761 kb on - strand at 369.789 kb on - strand at 369.850 kb on + strand at 369.850 kb on + strand at 369.850 kb on + strand at 369.962 kb on + strand, within HMPREF1058_RS17680
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C) remove 367,452 - HMPREF1058_RS17695 0.39 -1.5 367,456 - HMPREF1058_RS17695 0.39 -0.7 367,456 - -0.2 367,485 + HMPREF1058_RS17695 0.41 +0.0 367,606 - HMPREF1058_RS17695 0.50 +0.4 367,634 - HMPREF1058_RS17695 0.53 -0.6 367,634 - HMPREF1058_RS17695 0.53 +1.0 367,691 - HMPREF1058_RS17695 0.57 -0.4 367,706 + HMPREF1058_RS17695 0.58 -1.3 367,720 + HMPREF1058_RS17695 0.59 -0.6 367,732 + HMPREF1058_RS17695 0.60 -0.1 367,732 + HMPREF1058_RS17695 0.60 +0.6 367,733 - HMPREF1058_RS17695 0.60 +0.4 367,755 + HMPREF1058_RS17695 0.62 +1.3 367,756 - HMPREF1058_RS17695 0.62 +2.4 367,816 + HMPREF1058_RS17695 0.66 +0.6 367,866 + HMPREF1058_RS17695 0.70 +0.8 368,011 + HMPREF1058_RS17695 0.81 +0.6 368,038 + HMPREF1058_RS17695 0.83 +2.1 368,050 - HMPREF1058_RS17695 0.84 -0.5 368,090 + HMPREF1058_RS17695 0.87 +0.5 368,090 + HMPREF1058_RS17695 0.87 +0.9 368,095 - HMPREF1058_RS17695 0.88 +1.1 368,223 + +1.0 368,223 + +2.2 368,240 + +0.6 368,240 + +0.9 368,240 + +0.2 369,037 - +1.6 369,157 - -0.5 369,159 - -0.9 369,305 + HMPREF1058_RS17685 0.18 +0.7 369,321 + HMPREF1058_RS17685 0.21 -0.1 369,322 - HMPREF1058_RS17685 0.21 -0.4 369,326 + HMPREF1058_RS17685 0.22 +0.9 369,492 + HMPREF1058_RS17685 0.51 -1.3 369,493 - HMPREF1058_RS17685 0.51 -0.2 369,616 + HMPREF1058_RS17685 0.72 -0.3 369,617 - HMPREF1058_RS17685 0.73 -0.4 369,642 - HMPREF1058_RS17685 0.77 -1.2 369,684 + HMPREF1058_RS17685 0.84 +0.5 369,689 - HMPREF1058_RS17685 0.85 +0.9 369,689 - HMPREF1058_RS17685 0.85 -2.4 369,689 - HMPREF1058_RS17685 0.85 -2.5 369,761 - +0.0 369,789 - +0.9 369,850 + -0.8 369,850 + +0.5 369,850 + -0.5 369,962 + HMPREF1058_RS17680 0.11 -3.0
Or see this region's nucleotide sequence