Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15750

Experiment: D-Galactose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS15755 and HMPREF1058_RS15750 are separated by 161 nucleotidesHMPREF1058_RS15750 and HMPREF1058_RS15745 are separated by 105 nucleotidesHMPREF1058_RS15745 and HMPREF1058_RS15740 are separated by 155 nucleotides HMPREF1058_RS15755: HMPREF1058_RS15755 - HlyD family efflux transporter periplasmic adaptor subunit, at 843,984 to 845,231 _RS15755 HMPREF1058_RS15750: HMPREF1058_RS15750 - glucosaminidase domain-containing protein, at 845,393 to 846,289 _RS15750 HMPREF1058_RS15745: HMPREF1058_RS15745 - hypothetical protein, at 846,395 to 847,036 _RS15745 HMPREF1058_RS15740: HMPREF1058_RS15740 - hypothetical protein, at 847,192 to 847,740 _RS15740 Position (kb) 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 844.400 kb on - strand, within HMPREF1058_RS15755at 844.400 kb on - strand, within HMPREF1058_RS15755at 844.411 kb on - strand, within HMPREF1058_RS15755at 844.452 kb on - strand, within HMPREF1058_RS15755at 844.493 kb on + strand, within HMPREF1058_RS15755at 844.497 kb on + strand, within HMPREF1058_RS15755at 844.498 kb on - strand, within HMPREF1058_RS15755at 844.498 kb on - strand, within HMPREF1058_RS15755at 844.501 kb on + strand, within HMPREF1058_RS15755at 844.502 kb on - strand, within HMPREF1058_RS15755at 844.505 kb on + strand, within HMPREF1058_RS15755at 844.506 kb on - strand, within HMPREF1058_RS15755at 844.683 kb on - strand, within HMPREF1058_RS15755at 844.823 kb on - strand, within HMPREF1058_RS15755at 844.829 kb on + strand, within HMPREF1058_RS15755at 844.885 kb on - strand, within HMPREF1058_RS15755at 844.894 kb on + strand, within HMPREF1058_RS15755at 844.907 kb on + strand, within HMPREF1058_RS15755at 844.938 kb on - strand, within HMPREF1058_RS15755at 844.941 kb on + strand, within HMPREF1058_RS15755at 844.942 kb on - strand, within HMPREF1058_RS15755at 844.989 kb on - strand, within HMPREF1058_RS15755at 844.994 kb on + strand, within HMPREF1058_RS15755at 845.100 kb on - strand, within HMPREF1058_RS15755at 845.130 kb on + strandat 845.131 kb on - strandat 845.136 kb on + strandat 845.138 kb on + strandat 845.138 kb on + strandat 845.138 kb on + strandat 845.138 kb on + strandat 845.139 kb on - strandat 845.139 kb on - strandat 845.139 kb on - strandat 845.139 kb on - strandat 845.139 kb on - strandat 845.143 kb on - strandat 845.170 kb on + strandat 845.410 kb on + strandat 845.410 kb on + strandat 845.411 kb on - strandat 845.461 kb on - strandat 845.463 kb on - strandat 845.502 kb on + strand, within HMPREF1058_RS15750at 845.506 kb on + strand, within HMPREF1058_RS15750at 845.507 kb on - strand, within HMPREF1058_RS15750at 845.534 kb on + strand, within HMPREF1058_RS15750at 845.534 kb on + strand, within HMPREF1058_RS15750at 845.598 kb on - strand, within HMPREF1058_RS15750at 845.598 kb on - strand, within HMPREF1058_RS15750at 845.609 kb on - strand, within HMPREF1058_RS15750at 845.611 kb on - strand, within HMPREF1058_RS15750at 845.671 kb on + strand, within HMPREF1058_RS15750at 845.672 kb on - strand, within HMPREF1058_RS15750at 845.678 kb on - strand, within HMPREF1058_RS15750at 845.690 kb on + strand, within HMPREF1058_RS15750at 845.699 kb on - strand, within HMPREF1058_RS15750at 845.701 kb on - strand, within HMPREF1058_RS15750at 845.701 kb on - strand, within HMPREF1058_RS15750at 845.762 kb on - strand, within HMPREF1058_RS15750at 845.778 kb on + strand, within HMPREF1058_RS15750at 845.779 kb on - strand, within HMPREF1058_RS15750at 845.779 kb on - strand, within HMPREF1058_RS15750at 845.779 kb on - strand, within HMPREF1058_RS15750at 845.783 kb on - strand, within HMPREF1058_RS15750at 845.787 kb on - strand, within HMPREF1058_RS15750at 845.795 kb on + strand, within HMPREF1058_RS15750at 845.795 kb on + strand, within HMPREF1058_RS15750at 845.821 kb on - strand, within HMPREF1058_RS15750at 845.845 kb on - strand, within HMPREF1058_RS15750at 845.878 kb on + strand, within HMPREF1058_RS15750at 845.930 kb on + strand, within HMPREF1058_RS15750at 845.953 kb on - strand, within HMPREF1058_RS15750at 845.971 kb on + strand, within HMPREF1058_RS15750at 846.082 kb on + strand, within HMPREF1058_RS15750at 846.082 kb on + strand, within HMPREF1058_RS15750at 846.182 kb on - strand, within HMPREF1058_RS15750at 846.182 kb on - strand, within HMPREF1058_RS15750at 846.182 kb on - strand, within HMPREF1058_RS15750at 846.182 kb on - strandat 846.182 kb on - strand, within HMPREF1058_RS15750at 846.187 kb on + strand, within HMPREF1058_RS15750at 846.187 kb on + strand, within HMPREF1058_RS15750at 846.188 kb on - strand, within HMPREF1058_RS15750at 846.188 kb on - strand, within HMPREF1058_RS15750at 846.189 kb on + strand, within HMPREF1058_RS15750at 846.235 kb on + strandat 846.239 kb on + strandat 846.239 kb on + strandat 846.266 kb on - strandat 846.289 kb on + strandat 846.292 kb on - strandat 846.316 kb on + strandat 846.316 kb on + strandat 846.317 kb on - strandat 846.330 kb on + strandat 846.331 kb on - strandat 846.331 kb on - strandat 846.331 kb on - strandat 846.332 kb on + strandat 846.333 kb on - strandat 846.333 kb on - strandat 846.333 kb on - strandat 846.335 kb on - strandat 846.383 kb on + strandat 846.454 kb on + strandat 846.470 kb on + strand, within HMPREF1058_RS15745at 846.569 kb on - strand, within HMPREF1058_RS15745at 846.570 kb on + strand, within HMPREF1058_RS15745at 846.598 kb on + strand, within HMPREF1058_RS15745at 846.694 kb on + strand, within HMPREF1058_RS15745at 846.748 kb on + strand, within HMPREF1058_RS15745at 846.829 kb on - strand, within HMPREF1058_RS15745at 846.829 kb on - strand, within HMPREF1058_RS15745at 846.851 kb on + strand, within HMPREF1058_RS15745at 846.854 kb on + strand, within HMPREF1058_RS15745at 846.872 kb on + strand, within HMPREF1058_RS15745at 846.874 kb on + strand, within HMPREF1058_RS15745at 846.874 kb on + strand, within HMPREF1058_RS15745at 846.875 kb on - strand, within HMPREF1058_RS15745at 846.924 kb on + strand, within HMPREF1058_RS15745at 846.941 kb on + strand, within HMPREF1058_RS15745at 846.946 kb on + strand, within HMPREF1058_RS15745at 846.957 kb on + strand, within HMPREF1058_RS15745at 846.957 kb on + strand, within HMPREF1058_RS15745at 846.961 kb on + strand, within HMPREF1058_RS15745at 846.961 kb on + strand, within HMPREF1058_RS15745at 846.962 kb on - strand, within HMPREF1058_RS15745at 846.989 kb on + strandat 847.063 kb on + strandat 847.066 kb on + strandat 847.066 kb on + strandat 847.067 kb on - strandat 847.067 kb on - strandat 847.088 kb on - strandat 847.193 kb on + strandat 847.219 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C)
remove
844,400 - HMPREF1058_RS15755 0.33 -0.6
844,400 - HMPREF1058_RS15755 0.33 +1.9
844,411 - HMPREF1058_RS15755 0.34 +0.3
844,452 - HMPREF1058_RS15755 0.38 +1.2
844,493 + HMPREF1058_RS15755 0.41 +1.4
844,497 + HMPREF1058_RS15755 0.41 +1.7
844,498 - HMPREF1058_RS15755 0.41 +1.5
844,498 - HMPREF1058_RS15755 0.41 -0.2
844,501 + HMPREF1058_RS15755 0.41 +1.1
844,502 - HMPREF1058_RS15755 0.42 +0.5
844,505 + HMPREF1058_RS15755 0.42 +1.5
844,506 - HMPREF1058_RS15755 0.42 -0.3
844,683 - HMPREF1058_RS15755 0.56 +0.1
844,823 - HMPREF1058_RS15755 0.67 +0.2
844,829 + HMPREF1058_RS15755 0.68 +1.7
844,885 - HMPREF1058_RS15755 0.72 +1.2
844,894 + HMPREF1058_RS15755 0.73 -0.9
844,907 + HMPREF1058_RS15755 0.74 +0.8
844,938 - HMPREF1058_RS15755 0.76 +2.1
844,941 + HMPREF1058_RS15755 0.77 +2.2
844,942 - HMPREF1058_RS15755 0.77 +0.8
844,989 - HMPREF1058_RS15755 0.81 -0.1
844,994 + HMPREF1058_RS15755 0.81 +0.6
845,100 - HMPREF1058_RS15755 0.89 -0.3
845,130 + +0.8
845,131 - +1.0
845,136 + +0.9
845,138 + +3.7
845,138 + +1.5
845,138 + +0.2
845,138 + +0.5
845,139 - +1.1
845,139 - -0.9
845,139 - +0.8
845,139 - +0.9
845,139 - +1.9
845,143 - +0.5
845,170 + -1.1
845,410 + -1.4
845,410 + -1.1
845,411 - +0.8
845,461 - -0.2
845,463 - +0.3
845,502 + HMPREF1058_RS15750 0.12 +0.5
845,506 + HMPREF1058_RS15750 0.13 +0.4
845,507 - HMPREF1058_RS15750 0.13 -0.5
845,534 + HMPREF1058_RS15750 0.16 -0.3
845,534 + HMPREF1058_RS15750 0.16 +1.3
845,598 - HMPREF1058_RS15750 0.23 -1.6
845,598 - HMPREF1058_RS15750 0.23 -1.7
845,609 - HMPREF1058_RS15750 0.24 -1.4
845,611 - HMPREF1058_RS15750 0.24 -2.6
845,671 + HMPREF1058_RS15750 0.31 -4.7
845,672 - HMPREF1058_RS15750 0.31 -2.1
845,678 - HMPREF1058_RS15750 0.32 -2.5
845,690 + HMPREF1058_RS15750 0.33 -2.2
845,699 - HMPREF1058_RS15750 0.34 +0.6
845,701 - HMPREF1058_RS15750 0.34 -0.9
845,701 - HMPREF1058_RS15750 0.34 -1.6
845,762 - HMPREF1058_RS15750 0.41 -3.0
845,778 + HMPREF1058_RS15750 0.43 -2.2
845,779 - HMPREF1058_RS15750 0.43 -1.0
845,779 - HMPREF1058_RS15750 0.43 -1.9
845,779 - HMPREF1058_RS15750 0.43 -2.6
845,783 - HMPREF1058_RS15750 0.43 -2.5
845,787 - HMPREF1058_RS15750 0.44 -3.0
845,795 + HMPREF1058_RS15750 0.45 -0.8
845,795 + HMPREF1058_RS15750 0.45 -2.8
845,821 - HMPREF1058_RS15750 0.48 -2.5
845,845 - HMPREF1058_RS15750 0.50 -3.3
845,878 + HMPREF1058_RS15750 0.54 -2.2
845,930 + HMPREF1058_RS15750 0.60 -1.2
845,953 - HMPREF1058_RS15750 0.62 -3.4
845,971 + HMPREF1058_RS15750 0.64 -2.0
846,082 + HMPREF1058_RS15750 0.77 -0.6
846,082 + HMPREF1058_RS15750 0.77 -0.8
846,182 - HMPREF1058_RS15750 0.88 -2.9
846,182 - HMPREF1058_RS15750 0.88 +2.2
846,182 - HMPREF1058_RS15750 0.88 -2.3
846,182 - +1.2
846,182 - HMPREF1058_RS15750 0.88 +0.2
846,187 + HMPREF1058_RS15750 0.89 -0.1
846,187 + HMPREF1058_RS15750 0.89 -1.0
846,188 - HMPREF1058_RS15750 0.89 -3.9
846,188 - HMPREF1058_RS15750 0.89 -1.9
846,189 + HMPREF1058_RS15750 0.89 -3.4
846,235 + -0.1
846,239 + -2.6
846,239 + -0.5
846,266 - -1.6
846,289 + -0.1
846,292 - -0.3
846,316 + -4.5
846,316 + -3.1
846,317 - +0.7
846,330 + -2.8
846,331 - -0.7
846,331 - +1.2
846,331 - +0.1
846,332 + +0.6
846,333 - -1.2
846,333 - +0.4
846,333 - -0.6
846,335 - +0.3
846,383 + -0.3
846,454 + +1.7
846,470 + HMPREF1058_RS15745 0.12 -1.7
846,569 - HMPREF1058_RS15745 0.27 -0.9
846,570 + HMPREF1058_RS15745 0.27 -0.6
846,598 + HMPREF1058_RS15745 0.32 +1.8
846,694 + HMPREF1058_RS15745 0.47 -0.9
846,748 + HMPREF1058_RS15745 0.55 -0.0
846,829 - HMPREF1058_RS15745 0.68 -2.2
846,829 - HMPREF1058_RS15745 0.68 +1.1
846,851 + HMPREF1058_RS15745 0.71 -0.9
846,854 + HMPREF1058_RS15745 0.71 -0.5
846,872 + HMPREF1058_RS15745 0.74 -2.4
846,874 + HMPREF1058_RS15745 0.75 +0.4
846,874 + HMPREF1058_RS15745 0.75 -2.6
846,875 - HMPREF1058_RS15745 0.75 +0.6
846,924 + HMPREF1058_RS15745 0.82 -2.5
846,941 + HMPREF1058_RS15745 0.85 -0.6
846,946 + HMPREF1058_RS15745 0.86 -1.0
846,957 + HMPREF1058_RS15745 0.88 -0.4
846,957 + HMPREF1058_RS15745 0.88 +0.2
846,961 + HMPREF1058_RS15745 0.88 +0.8
846,961 + HMPREF1058_RS15745 0.88 +0.9
846,962 - HMPREF1058_RS15745 0.88 +0.7
846,989 + +0.3
847,063 + -2.6
847,066 + +1.6
847,066 + -0.1
847,067 - +1.1
847,067 - -2.0
847,088 - -1.6
847,193 + +2.1
847,219 - +1.5

Or see this region's nucleotide sequence