Experiment: D-Galactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11280 and HMPREF1058_RS11275 are separated by 337 nucleotides HMPREF1058_RS11275 and HMPREF1058_RS11270 are separated by 37 nucleotides HMPREF1058_RS11270 and HMPREF1058_RS11265 are separated by 185 nucleotides
HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413
_RS11280
HMPREF1058_RS11275: HMPREF1058_RS11275 - hypothetical protein, at 410,751 to 411,101
_RS11275
HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632
_RS11270
HMPREF1058_RS11265: HMPREF1058_RS11265 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 412,818 to 415,412
_RS11265
Position (kb) 411
412
413 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.168 kb on - strand, within HMPREF1058_RS11280 at 410.241 kb on - strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.414 kb on - strand at 410.427 kb on + strand at 410.571 kb on + strand at 410.574 kb on + strand at 410.574 kb on + strand at 410.579 kb on + strand at 410.588 kb on + strand at 410.690 kb on + strand at 410.690 kb on + strand at 410.691 kb on - strand at 410.734 kb on + strand at 410.735 kb on - strand at 410.735 kb on - strand at 410.779 kb on + strand at 410.782 kb on + strand at 410.867 kb on + strand, within HMPREF1058_RS11275 at 410.868 kb on - strand, within HMPREF1058_RS11275 at 410.882 kb on - strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 411.030 kb on - strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.114 kb on + strand at 411.115 kb on - strand at 411.118 kb on - strand at 411.136 kb on - strand at 411.148 kb on - strand at 411.193 kb on + strand at 411.304 kb on - strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.325 kb on - strand, within HMPREF1058_RS11270 at 411.337 kb on - strand, within HMPREF1058_RS11270 at 411.351 kb on - strand, within HMPREF1058_RS11270 at 411.436 kb on + strand, within HMPREF1058_RS11270 at 411.437 kb on - strand, within HMPREF1058_RS11270 at 411.474 kb on - strand, within HMPREF1058_RS11270 at 411.580 kb on - strand, within HMPREF1058_RS11270 at 411.734 kb on + strand, within HMPREF1058_RS11270 at 411.740 kb on + strand, within HMPREF1058_RS11270 at 411.741 kb on - strand, within HMPREF1058_RS11270 at 411.879 kb on + strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.982 kb on + strand, within HMPREF1058_RS11270 at 411.983 kb on - strand, within HMPREF1058_RS11270 at 412.047 kb on + strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.091 kb on - strand, within HMPREF1058_RS11270 at 412.179 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.182 kb on - strand, within HMPREF1058_RS11270 at 412.185 kb on + strand, within HMPREF1058_RS11270 at 412.186 kb on - strand, within HMPREF1058_RS11270 at 412.298 kb on - strand, within HMPREF1058_RS11270 at 412.299 kb on + strand, within HMPREF1058_RS11270 at 412.299 kb on + strand, within HMPREF1058_RS11270 at 412.360 kb on - strand, within HMPREF1058_RS11270 at 412.513 kb on + strand at 412.578 kb on + strand at 412.610 kb on + strand at 412.635 kb on + strand at 412.697 kb on - strand at 412.774 kb on + strand at 412.792 kb on + strand at 412.793 kb on - strand at 412.797 kb on - strand at 412.818 kb on - strand at 412.837 kb on - strand at 412.888 kb on - strand at 413.006 kb on + strand at 413.013 kb on + strand at 413.120 kb on + strand, within HMPREF1058_RS11265 at 413.120 kb on + strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.271 kb on + strand, within HMPREF1058_RS11265 at 413.463 kb on + strand, within HMPREF1058_RS11265 at 413.463 kb on + strand, within HMPREF1058_RS11265 at 413.504 kb on - strand, within HMPREF1058_RS11265 at 413.512 kb on + strand, within HMPREF1058_RS11265 at 413.512 kb on + strand, within HMPREF1058_RS11265 at 413.524 kb on - strand, within HMPREF1058_RS11265 at 413.599 kb on - strand, within HMPREF1058_RS11265
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C) remove 410,167 + HMPREF1058_RS11280 0.82 -3.2 410,167 + HMPREF1058_RS11280 0.82 -0.7 410,167 + HMPREF1058_RS11280 0.82 -3.8 410,168 - HMPREF1058_RS11280 0.82 -0.9 410,241 - HMPREF1058_RS11280 0.87 -0.6 410,270 + HMPREF1058_RS11280 0.89 -1.0 410,270 + HMPREF1058_RS11280 0.89 -1.1 410,270 + HMPREF1058_RS11280 0.89 -0.3 410,414 - +0.5 410,427 + -2.1 410,571 + -0.2 410,574 + -0.1 410,574 + -0.4 410,579 + -2.6 410,588 + +2.3 410,690 + -2.5 410,690 + -1.9 410,691 - -3.5 410,734 + -3.1 410,735 - +0.3 410,735 - +1.3 410,779 + -2.9 410,782 + +2.5 410,867 + HMPREF1058_RS11275 0.33 -2.0 410,868 - HMPREF1058_RS11275 0.33 -2.8 410,882 - HMPREF1058_RS11275 0.37 -3.6 410,896 + HMPREF1058_RS11275 0.41 -0.7 410,896 + HMPREF1058_RS11275 0.41 -1.7 411,030 - HMPREF1058_RS11275 0.79 -3.3 411,031 + HMPREF1058_RS11275 0.80 -0.9 411,031 + HMPREF1058_RS11275 0.80 -1.6 411,114 + -0.2 411,115 - -3.1 411,118 - -3.3 411,136 - -2.5 411,148 - -3.2 411,193 + -1.0 411,304 - HMPREF1058_RS11270 0.11 -2.5 411,306 + HMPREF1058_RS11270 0.11 -4.2 411,306 + HMPREF1058_RS11270 0.11 -3.5 411,306 + HMPREF1058_RS11270 0.11 -2.1 411,325 - HMPREF1058_RS11270 0.12 -2.2 411,337 - HMPREF1058_RS11270 0.13 -1.6 411,351 - HMPREF1058_RS11270 0.14 -2.9 411,436 + HMPREF1058_RS11270 0.20 -1.3 411,437 - HMPREF1058_RS11270 0.20 -3.1 411,474 - HMPREF1058_RS11270 0.22 -2.9 411,580 - HMPREF1058_RS11270 0.30 -1.5 411,734 + HMPREF1058_RS11270 0.40 -4.2 411,740 + HMPREF1058_RS11270 0.40 -3.4 411,741 - HMPREF1058_RS11270 0.40 -3.7 411,879 + HMPREF1058_RS11270 0.50 -3.4 411,880 - HMPREF1058_RS11270 0.50 -3.8 411,880 - HMPREF1058_RS11270 0.50 -1.0 411,982 + HMPREF1058_RS11270 0.56 -3.0 411,983 - HMPREF1058_RS11270 0.56 -0.5 412,047 + HMPREF1058_RS11270 0.61 -2.6 412,048 - HMPREF1058_RS11270 0.61 -2.5 412,048 - HMPREF1058_RS11270 0.61 -1.5 412,091 - HMPREF1058_RS11270 0.64 -2.5 412,179 + HMPREF1058_RS11270 0.70 -0.3 412,181 + HMPREF1058_RS11270 0.70 -4.2 412,181 + HMPREF1058_RS11270 0.70 -1.4 412,181 + HMPREF1058_RS11270 0.70 -0.6 412,181 + HMPREF1058_RS11270 0.70 -4.7 412,181 + HMPREF1058_RS11270 0.70 -2.7 412,182 - HMPREF1058_RS11270 0.70 -4.1 412,185 + HMPREF1058_RS11270 0.70 -3.9 412,186 - HMPREF1058_RS11270 0.70 -3.6 412,298 - HMPREF1058_RS11270 0.78 -4.0 412,299 + HMPREF1058_RS11270 0.78 -0.9 412,299 + HMPREF1058_RS11270 0.78 -4.2 412,360 - HMPREF1058_RS11270 0.82 -1.3 412,513 + -4.4 412,578 + -3.1 412,610 + -1.2 412,635 + -0.3 412,697 - +0.5 412,774 + +0.5 412,792 + +1.1 412,793 - -2.3 412,797 - -0.9 412,818 - -0.7 412,837 - +0.9 412,888 - +0.4 413,006 + -0.8 413,013 + -0.8 413,120 + HMPREF1058_RS11265 0.12 -1.2 413,120 + HMPREF1058_RS11265 0.12 +0.1 413,121 - HMPREF1058_RS11265 0.12 -0.9 413,121 - HMPREF1058_RS11265 0.12 -1.0 413,121 - HMPREF1058_RS11265 0.12 -0.8 413,271 + HMPREF1058_RS11265 0.17 -1.6 413,463 + HMPREF1058_RS11265 0.25 +1.0 413,463 + HMPREF1058_RS11265 0.25 +0.5 413,504 - HMPREF1058_RS11265 0.26 +0.0 413,512 + HMPREF1058_RS11265 0.27 +0.9 413,512 + HMPREF1058_RS11265 0.27 -1.1 413,524 - HMPREF1058_RS11265 0.27 -0.4 413,599 - HMPREF1058_RS11265 0.30 +0.6
Or see this region's nucleotide sequence