Experiment: D-Galactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02365 and HMPREF1058_RS02360 are separated by 186 nucleotides HMPREF1058_RS02360 and HMPREF1058_RS02355 are separated by 12 nucleotides
HMPREF1058_RS02365: HMPREF1058_RS02365 - DUF4981 domain-containing protein, at 211,399 to 214,629
_RS02365
HMPREF1058_RS02360: HMPREF1058_RS02360 - RagB/SusD family nutrient uptake outer membrane protein, at 214,816 to 216,633
_RS02360
HMPREF1058_RS02355: HMPREF1058_RS02355 - TonB-dependent receptor, at 216,646 to 219,738
_RS02355
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 213.831 kb on - strand, within HMPREF1058_RS02365 at 213.842 kb on + strand, within HMPREF1058_RS02365 at 213.880 kb on - strand, within HMPREF1058_RS02365 at 213.979 kb on + strand, within HMPREF1058_RS02365 at 213.997 kb on + strand, within HMPREF1058_RS02365 at 214.095 kb on + strand, within HMPREF1058_RS02365 at 214.126 kb on - strand, within HMPREF1058_RS02365 at 214.128 kb on + strand, within HMPREF1058_RS02365 at 214.129 kb on - strand, within HMPREF1058_RS02365 at 214.132 kb on - strand, within HMPREF1058_RS02365 at 214.189 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.193 kb on + strand, within HMPREF1058_RS02365 at 214.213 kb on + strand, within HMPREF1058_RS02365 at 214.214 kb on - strand, within HMPREF1058_RS02365 at 214.217 kb on + strand, within HMPREF1058_RS02365 at 214.218 kb on - strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.226 kb on - strand, within HMPREF1058_RS02365 at 214.250 kb on - strand, within HMPREF1058_RS02365 at 214.284 kb on + strand, within HMPREF1058_RS02365 at 214.355 kb on - strand at 214.394 kb on + strand at 214.551 kb on + strand at 214.552 kb on - strand at 214.612 kb on + strand at 214.624 kb on - strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.672 kb on + strand at 214.700 kb on + strand at 214.801 kb on + strand at 214.861 kb on + strand at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.187 kb on + strand, within HMPREF1058_RS02360 at 215.233 kb on + strand, within HMPREF1058_RS02360 at 215.353 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.382 kb on + strand, within HMPREF1058_RS02360 at 215.505 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.555 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.585 kb on + strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.592 kb on + strand, within HMPREF1058_RS02360 at 215.639 kb on + strand, within HMPREF1058_RS02360 at 215.663 kb on + strand, within HMPREF1058_RS02360 at 215.687 kb on + strand, within HMPREF1058_RS02360 at 215.721 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.738 kb on + strand, within HMPREF1058_RS02360 at 215.818 kb on + strand, within HMPREF1058_RS02360 at 215.819 kb on - strand, within HMPREF1058_RS02360 at 215.867 kb on + strand, within HMPREF1058_RS02360 at 215.950 kb on - strand, within HMPREF1058_RS02360 at 215.952 kb on - strand, within HMPREF1058_RS02360 at 215.984 kb on - strand, within HMPREF1058_RS02360 at 216.034 kb on - strand, within HMPREF1058_RS02360 at 216.078 kb on + strand, within HMPREF1058_RS02360 at 216.146 kb on + strand, within HMPREF1058_RS02360 at 216.147 kb on - strand, within HMPREF1058_RS02360 at 216.174 kb on + strand, within HMPREF1058_RS02360 at 216.175 kb on - strand, within HMPREF1058_RS02360 at 216.176 kb on + strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.276 kb on - strand, within HMPREF1058_RS02360 at 216.277 kb on - strand, within HMPREF1058_RS02360 at 216.290 kb on - strand, within HMPREF1058_RS02360 at 216.291 kb on + strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.437 kb on + strand, within HMPREF1058_RS02360 at 216.438 kb on - strand, within HMPREF1058_RS02360 at 216.464 kb on - strand at 216.609 kb on + strand at 216.610 kb on - strand at 216.671 kb on - strand at 216.674 kb on + strand at 216.674 kb on + strand at 216.675 kb on - strand at 216.675 kb on - strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.803 kb on - strand at 216.878 kb on + strand at 216.879 kb on - strand at 216.916 kb on - strand at 216.916 kb on - strand at 216.918 kb on + strand at 216.981 kb on + strand, within HMPREF1058_RS02355 at 217.089 kb on + strand, within HMPREF1058_RS02355 at 217.090 kb on - strand, within HMPREF1058_RS02355 at 217.095 kb on + strand, within HMPREF1058_RS02355 at 217.167 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.310 kb on + strand, within HMPREF1058_RS02355 at 217.311 kb on - strand, within HMPREF1058_RS02355 at 217.425 kb on + strand, within HMPREF1058_RS02355 at 217.537 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C) remove 213,831 - HMPREF1058_RS02365 0.75 +0.1 213,842 + HMPREF1058_RS02365 0.76 +0.9 213,880 - HMPREF1058_RS02365 0.77 -0.3 213,979 + HMPREF1058_RS02365 0.80 +0.3 213,997 + HMPREF1058_RS02365 0.80 -0.7 214,095 + HMPREF1058_RS02365 0.83 +1.4 214,126 - HMPREF1058_RS02365 0.84 -0.3 214,128 + HMPREF1058_RS02365 0.84 -1.2 214,129 - HMPREF1058_RS02365 0.84 -0.4 214,132 - HMPREF1058_RS02365 0.85 +0.1 214,189 + HMPREF1058_RS02365 0.86 -2.5 214,191 + HMPREF1058_RS02365 0.86 +1.5 214,191 + HMPREF1058_RS02365 0.86 +0.7 214,193 + HMPREF1058_RS02365 0.86 -0.7 214,213 + HMPREF1058_RS02365 0.87 +2.2 214,214 - HMPREF1058_RS02365 0.87 +0.3 214,217 + HMPREF1058_RS02365 0.87 +3.7 214,218 - HMPREF1058_RS02365 0.87 -0.1 214,225 + HMPREF1058_RS02365 0.87 +0.2 214,225 + HMPREF1058_RS02365 0.87 +1.8 214,226 - HMPREF1058_RS02365 0.87 -0.5 214,250 - HMPREF1058_RS02365 0.88 +0.7 214,284 + HMPREF1058_RS02365 0.89 +0.6 214,355 - +1.2 214,394 + -2.5 214,551 + +1.9 214,552 - -2.4 214,612 + -0.3 214,624 - -0.3 214,632 + -0.3 214,632 + -0.7 214,632 + +0.5 214,633 - +0.1 214,633 - +0.4 214,633 - +0.6 214,633 - -0.6 214,672 + +1.2 214,700 + -0.1 214,801 + +0.1 214,861 + -0.3 215,009 + HMPREF1058_RS02360 0.11 -1.4 215,009 + HMPREF1058_RS02360 0.11 -1.1 215,187 + HMPREF1058_RS02360 0.20 -0.8 215,233 + HMPREF1058_RS02360 0.23 -0.2 215,353 - HMPREF1058_RS02360 0.30 -0.3 215,373 - HMPREF1058_RS02360 0.31 +0.1 215,373 - HMPREF1058_RS02360 0.31 -0.4 215,382 + HMPREF1058_RS02360 0.31 -0.6 215,505 - HMPREF1058_RS02360 0.38 -0.6 215,508 - HMPREF1058_RS02360 0.38 -0.6 215,508 - HMPREF1058_RS02360 0.38 -0.5 215,508 - HMPREF1058_RS02360 0.38 -1.4 215,555 - HMPREF1058_RS02360 0.41 -0.9 215,568 - HMPREF1058_RS02360 0.41 -0.1 215,568 - HMPREF1058_RS02360 0.41 +0.3 215,585 + HMPREF1058_RS02360 0.42 -0.1 215,586 - HMPREF1058_RS02360 0.42 -0.5 215,586 - HMPREF1058_RS02360 0.42 -1.7 215,592 + HMPREF1058_RS02360 0.43 -1.1 215,639 + HMPREF1058_RS02360 0.45 -1.2 215,663 + HMPREF1058_RS02360 0.47 -1.1 215,687 + HMPREF1058_RS02360 0.48 -0.4 215,721 - HMPREF1058_RS02360 0.50 -0.9 215,737 - HMPREF1058_RS02360 0.51 +0.6 215,737 - HMPREF1058_RS02360 0.51 +0.1 215,738 + HMPREF1058_RS02360 0.51 +0.0 215,818 + HMPREF1058_RS02360 0.55 -0.2 215,819 - HMPREF1058_RS02360 0.55 -2.7 215,867 + HMPREF1058_RS02360 0.58 +0.2 215,950 - HMPREF1058_RS02360 0.62 -0.6 215,952 - HMPREF1058_RS02360 0.62 -0.7 215,984 - HMPREF1058_RS02360 0.64 +0.1 216,034 - HMPREF1058_RS02360 0.67 -0.3 216,078 + HMPREF1058_RS02360 0.69 +0.2 216,146 + HMPREF1058_RS02360 0.73 -0.8 216,147 - HMPREF1058_RS02360 0.73 +0.2 216,174 + HMPREF1058_RS02360 0.75 -1.8 216,175 - HMPREF1058_RS02360 0.75 +2.5 216,176 + HMPREF1058_RS02360 0.75 -0.8 216,177 - HMPREF1058_RS02360 0.75 -0.5 216,177 - HMPREF1058_RS02360 0.75 -0.2 216,178 + HMPREF1058_RS02360 0.75 +0.2 216,178 + HMPREF1058_RS02360 0.75 -1.5 216,276 - HMPREF1058_RS02360 0.80 +1.0 216,277 - HMPREF1058_RS02360 0.80 +1.4 216,290 - HMPREF1058_RS02360 0.81 -0.1 216,291 + HMPREF1058_RS02360 0.81 -0.8 216,434 - HMPREF1058_RS02360 0.89 -0.8 216,434 - HMPREF1058_RS02360 0.89 -0.6 216,437 + HMPREF1058_RS02360 0.89 -1.6 216,438 - HMPREF1058_RS02360 0.89 -0.1 216,464 - +0.1 216,609 + +0.2 216,610 - -1.8 216,671 - -1.6 216,674 + +0.5 216,674 + +0.0 216,675 - +1.2 216,675 - +1.9 216,737 + +2.5 216,738 - -0.5 216,780 - -0.4 216,780 - +1.3 216,803 - +2.1 216,878 + -1.8 216,879 - +3.1 216,916 - -1.3 216,916 - +0.1 216,918 + -0.8 216,981 + HMPREF1058_RS02355 0.11 -0.1 217,089 + HMPREF1058_RS02355 0.14 -0.1 217,090 - HMPREF1058_RS02355 0.14 -0.8 217,095 + HMPREF1058_RS02355 0.15 -0.8 217,167 - HMPREF1058_RS02355 0.17 -1.3 217,278 - HMPREF1058_RS02355 0.20 +1.8 217,278 - HMPREF1058_RS02355 0.20 -2.8 217,310 + HMPREF1058_RS02355 0.21 -2.1 217,311 - HMPREF1058_RS02355 0.22 +0.3 217,425 + HMPREF1058_RS02355 0.25 -1.1 217,537 - HMPREF1058_RS02355 0.29 -3.5 217,621 - HMPREF1058_RS02355 0.32 +0.4 217,621 - HMPREF1058_RS02355 0.32 -0.1
Or see this region's nucleotide sequence