Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01110

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
1,214,789	-		CCNA_01109	0.45	-0.4
1,214,812	+		CCNA_01109	0.46	+0.9
1,214,820	+		CCNA_01109	0.47	+1.2
1,214,857	+		CCNA_01109	0.49	+0.5
1,214,861	-		CCNA_01109	0.49	+0.4
1,214,915	-		CCNA_01109	0.52	-0.6
1,214,958	+		CCNA_01109	0.55	-1.7
1,215,039	+		CCNA_01109	0.59	+0.3
1,215,060	+		CCNA_01109	0.60	+1.5
1,215,060	+		CCNA_01109	0.60	+0.4
1,215,060	+		CCNA_01109	0.60	+1.4
1,215,060	+		CCNA_01109	0.60	+1.5
1,215,060	+		CCNA_01109	0.60	+0.4
1,215,060	+		CCNA_01109	0.60	+1.4
1,215,060	+		CCNA_01109	0.60	+0.5
1,215,060	+		CCNA_01109	0.60	+0.3
1,215,060	+		CCNA_01109	0.60	+2.0
1,215,060	+		CCNA_01109	0.60	+0.9
1,215,060	+		CCNA_01109	0.60	+1.3
1,215,068	-		CCNA_01109	0.61	+0.5
1,215,068	-		CCNA_01109	0.61	-0.1
1,215,068	-		CCNA_01109	0.61	-0.9
1,215,068	-		CCNA_01109	0.61	+0.3
1,215,068	-		CCNA_01109	0.61	+1.6
1,215,087	-		CCNA_01109	0.62	-0.6
1,215,097	-		CCNA_01109	0.62	+1.9
1,215,107	-		CCNA_01109	0.63	+0.2
1,215,168	-		CCNA_01109	0.66	-0.1
1,215,176	+		CCNA_01109	0.67	+1.5
1,215,184	-		CCNA_01109	0.67	-0.6
1,215,184	-		CCNA_01109	0.67	-0.9
1,215,209	+		CCNA_01109	0.69	-0.4
1,215,227	-		CCNA_01109	0.70	-0.4
1,215,247	-		CCNA_01109	0.71	+0.7
1,215,247	-		CCNA_01109	0.71	+1.1
1,215,251	-		CCNA_01109	0.71	-1.8
1,215,261	-		CCNA_01109	0.71	-1.2
1,215,270	+		CCNA_01109	0.72	+0.8
1,215,270	+		CCNA_01109	0.72	+0.4
1,215,278	-		CCNA_01109	0.72	-0.5
1,215,278	-		CCNA_01109	0.72	-0.9
1,215,321	+		CCNA_01109	0.75	+0.4
1,215,321	+		CCNA_01109	0.75	+1.3
1,215,321	+		CCNA_01109	0.75	+0.1
1,215,377	+		CCNA_01109	0.78	+1.5
1,215,377	+		CCNA_01109	0.78	+0.2
1,215,377	+		CCNA_01109	0.78	+1.4
1,215,377	+		CCNA_01109	0.78	+0.4
1,215,377	+		CCNA_01109	0.78	+0.7
1,215,377	+		CCNA_01109	0.78	+1.0
1,215,377	+		CCNA_01109	0.78	+0.3
1,215,385	-		CCNA_01109	0.78	-2.4
1,215,385	-		CCNA_01109	0.78	-0.1
1,215,395	-		CCNA_01109	0.79	-2.0
1,215,457	+		CCNA_01109	0.82	+1.3
1,215,458	-		CCNA_01109	0.82	-1.4
1,215,464	+		CCNA_01109	0.83	+1.4
1,215,469	+		CCNA_01109	0.83	+0.4
1,215,469	+		CCNA_01109	0.83	+1.0
1,215,469	+		CCNA_01109	0.83	+2.3
1,215,469	+		CCNA_01109	0.83	+0.4
1,215,474	+		CCNA_01109	0.83	+0.9
1,215,497	+		CCNA_01109	0.85	+1.0
1,215,505	-		CCNA_01109	0.85	-2.1
1,215,554	-		CCNA_01109	0.88	-1.0
1,215,556	+		CCNA_01109	0.88	+0.4
1,215,556	+		CCNA_01109	0.88	+0.9
1,215,557	+		CCNA_01109	0.88	+1.1
1,215,557	+		CCNA_01109	0.88	+0.9
1,215,562	+		CCNA_01109	0.88	+0.6
1,215,567	+		CCNA_01109	0.89	+2.5
1,215,585	+		CCNA_01109	0.90	+1.6
1,215,585	+		CCNA_01109	0.90	+0.9
1,215,593	+				+1.8
1,215,593	+				+0.9
1,215,601	-				+0.7
1,215,603	+				+1.1
1,215,603	+				+0.8
1,215,635	+				+0.3
1,215,692	-				-1.2
1,215,724	+				+1.9
1,215,724	+				+4.2
1,215,732	-				+1.9
1,215,732	-				-0.9
1,215,772	+				+1.8
1,215,782	+				+1.2
1,215,789	+				+1.4
1,215,789	+				+0.9
1,215,794	+				+0.3
1,215,797	-				-0.5
1,215,800	+				+0.5
1,215,800	+				+1.2
1,215,800	+				+1.5
1,215,807	+				+2.2
1,215,808	-				+0.3
1,215,808	-				-1.7
1,215,887	+		CCNA_01110	0.12	+2.3
1,215,900	-		CCNA_01110	0.14	-1.4
1,215,928	-		CCNA_01110	0.17	-1.1
1,215,928	-				+2.3
1,215,931	+				+1.3
1,215,944	-		CCNA_01110	0.18	-0.2
1,215,972	+		CCNA_01110	0.21	+0.8
1,215,987	+		CCNA_01110	0.23	-0.5
1,215,987	+		CCNA_01110	0.23	+0.4
1,216,014	+		CCNA_01110	0.26	+1.2
1,216,022	-		CCNA_01110	0.27	-1.0
1,216,033	+		CCNA_01110	0.28	+0.5
1,216,047	+		CCNA_01110	0.29	+0.8
1,216,055	-		CCNA_01110	0.30	-2.0
1,216,079	+		CCNA_01110	0.33	+0.6
1,216,098	-		CCNA_01110	0.35	+0.5
1,216,157	-		CCNA_01110	0.41	+0.5
1,216,323	+		CCNA_01110	0.59	+1.6
1,216,333	-		CCNA_01110	0.60	-3.4
1,216,362	-		CCNA_01110	0.63	-1.3
1,216,362	-		CCNA_01110	0.63	-2.2
1,216,401	+		CCNA_01110	0.68	+1.5
1,216,401	+		CCNA_01110	0.68	+1.4
1,216,409	-		CCNA_01110	0.69	-0.8
1,216,409	-		CCNA_01110	0.69	-1.2
1,216,443	-		CCNA_01110	0.72	-0.5
1,216,460	+		CCNA_01110	0.74	-0.1
1,216,475	+		CCNA_01110	0.76	+0.9
1,216,485	+		CCNA_01110	0.77	+1.1
1,216,485	+		CCNA_01110	0.77	+1.6
1,216,485	+		CCNA_01110	0.77	+0.6
1,216,485	+		CCNA_01110	0.77	+1.7
1,216,485	+		CCNA_01110	0.77	+0.8
1,216,493	-		CCNA_01110	0.78	-1.9
1,216,506	-		CCNA_01110	0.79	-0.9
1,216,520	+		CCNA_01110	0.80	+0.8
1,216,520	+		CCNA_01110	0.80	+1.7
1,216,520	+		CCNA_01110	0.80	+0.4
1,216,520	+		CCNA_01110	0.80	+1.3
1,216,520	+		CCNA_01110	0.80	-0.3
1,216,520	+		CCNA_01110	0.80	+1.6
1,216,520	+		CCNA_01110	0.80	+1.6
1,216,528	-		CCNA_01110	0.81	-1.8
1,216,528	-		CCNA_01110	0.81	-1.3
1,216,528	-		CCNA_01110	0.81	-1.3
1,216,528	-		CCNA_01110	0.81	+0.1
1,216,541	-		CCNA_01110	0.83	-0.3
1,216,563	-		CCNA_01110	0.85	+1.9
1,216,601	+		CCNA_01110	0.89	+1.2
1,216,601	+		CCNA_01110	0.89	+1.5
1,216,601	+		CCNA_01110	0.89	+2.2
1,216,628	-				+0.4
1,216,680	+				+1.5
1,216,689	+				+0.2
1,216,689	+				+2.1
1,216,689	+				-0.8
1,216,689	+				+0.7
1,216,689	+				+2.6
1,216,689	+				+1.0
1,216,696	+				+0.9
1,216,697	-				-0.9
1,216,697	-				+0.9
1,216,697	-				-2.2
1,216,697	-				-0.6
1,216,788	-				-1.7
1,216,802	+				+0.6
1,216,815	+				-2.9
1,216,851	+				+0.5
1,216,863	+				-1.1
1,216,871	-				-0.1
1,217,009	+				-0.7
1,217,009	+				+0.0
1,217,009	+				+0.5
1,217,009	+				+1.0
1,217,017	-				-1.7
1,217,041	+				-1.6
1,217,051	+				+1.4
1,217,051	+				+0.4
1,217,073	-		CCNA_01111	0.12	-1.5
1,217,156	+		CCNA_01111	0.35	-1.3
1,217,200	+		CCNA_01111	0.47	-0.7
1,217,219	-		CCNA_01111	0.52	+0.5
1,217,220	+		CCNA_01111	0.52	+0.1
1,217,220	+		CCNA_01111	0.52	-0.5
1,217,220	+		CCNA_01111	0.52	-0.1
1,217,223	-		CCNA_01111	0.53	-1.1
1,217,223	-		CCNA_01111	0.53	-0.3
1,217,225	+		CCNA_01111	0.53	+0.4
1,217,225	+		CCNA_01111	0.53	+0.1
1,217,228	-		CCNA_01111	0.54	-1.1
1,217,322	+		CCNA_01111	0.80	-0.8
1,217,323	+		CCNA_01111	0.80	-1.1
1,217,346	+		CCNA_01111	0.86	-0.3
1,217,346	+		CCNA_01111	0.86	-0.0
1,217,354	-		CCNA_01111	0.88	-0.1
1,217,360	+				+1.1
1,217,437	-				-0.3
1,217,473	+		CCNA_01112	0.10	+1.5
1,217,486	-		CCNA_01112	0.12	-0.1
1,217,499	-		CCNA_01112	0.14	+1.4
1,217,523	+		CCNA_01112	0.17	-1.1
1,217,567	-		CCNA_01112	0.23	+0.1
1,217,582	+		CCNA_01112	0.25	+0.6
1,217,582	+		CCNA_01112	0.25	+1.5
1,217,582	+		CCNA_01112	0.25	+0.2
1,217,590	-		CCNA_01112	0.26	+1.3
1,217,590	-		CCNA_01112	0.26	-0.5
1,217,608	-				+0.0
1,217,609	-		CCNA_01112	0.29	-0.5
1,217,609	-		CCNA_01112	0.29	-1.8