Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00988

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
1,067,127	+		CCNA_00986	0.32	-3.0
1,067,174	+		CCNA_00986	0.37	+1.6
1,067,182	-		CCNA_00986	0.37	-0.3
1,067,216	-		CCNA_00986	0.41	+1.7
1,067,224	-		CCNA_00986	0.42	-0.1
1,067,224	-		CCNA_00986	0.42	-0.2
1,067,296	+		CCNA_00986	0.49	-0.8
1,067,296	+		CCNA_00986	0.49	-1.9
1,067,303	+		CCNA_00986	0.50	-1.2
1,067,392	+		CCNA_00986	0.59	-0.5
1,067,471	+		CCNA_00986	0.68	+0.8
1,067,485	+		CCNA_00986	0.69	+0.1
1,067,514	-		CCNA_00986	0.72	-0.1
1,067,558	+		CCNA_00986	0.77	-0.6
1,067,568	+		CCNA_00986	0.78	-1.8
1,067,571	-		CCNA_00986	0.78	-1.2
1,067,598	-		CCNA_00986	0.81	+1.5
1,067,698	+				-0.7
1,067,698	+				-1.9
1,067,698	+				-0.0
1,067,706	-				-1.8
1,067,753	-				+0.9
1,067,764	+				-1.1
1,067,799	-				-2.7
1,067,819	+				+0.3
1,067,827	-				+0.9
1,067,830	-				-1.7
1,067,843	-				+0.1
1,067,847	-				-0.7
1,067,871	-		CCNA_00987	0.14	-2.3
1,067,878	+		CCNA_00987	0.17	+2.1
1,067,885	+		CCNA_00987	0.21	+0.7
1,067,893	-		CCNA_00987	0.25	-0.1
1,067,917	+		CCNA_00987	0.36	+0.5
1,067,918	+		CCNA_00987	0.37	+0.4
1,067,928	+		CCNA_00987	0.42	-0.5
1,067,935	+		CCNA_00987	0.45	+0.4
1,067,941	+		CCNA_00987	0.48	+1.2
1,067,943	-		CCNA_00987	0.49	-0.3
1,067,954	+		CCNA_00987	0.54	+0.1
1,067,954	+		CCNA_00987	0.54	+0.8
1,067,954	+		CCNA_00987	0.54	+1.4
1,067,962	+		CCNA_00987	0.58	+0.9
1,067,962	+		CCNA_00987	0.58	+0.9
1,067,962	-		CCNA_00987	0.58	-0.2
1,067,970	-		CCNA_00987	0.62	+0.8
1,067,970	-		CCNA_00987	0.62	-1.7
1,067,975	+		CCNA_00987	0.65	+0.5
1,067,980	+		CCNA_00987	0.67	+0.9
1,067,980	+		CCNA_00987	0.67	+0.8
1,067,996	+		CCNA_00987	0.75	+1.7
1,067,996	+		CCNA_00987	0.75	+1.4
1,068,001	+		CCNA_00987	0.77	+1.0
1,068,004	-		CCNA_00987	0.79	+0.1
1,068,004	-		CCNA_00987	0.79	-0.7
1,068,033	+				+0.2
1,068,034	+				+0.4
1,068,090	-				+2.1
1,068,125	+				+0.9
1,068,130	+				+0.6
1,068,146	-				+0.1
1,068,147	-				+0.8
1,068,156	+				+0.4
1,068,158	+				-0.2
1,068,158	+				-0.4
1,068,158	+				-0.7
1,068,158	+				-0.4
1,068,158	+				+1.1
1,068,158	+				+0.2
1,068,160	-				+1.4
1,068,163	+				+0.0
1,068,166	-				+0.0
1,068,166	-				+0.3
1,068,166	-				+1.5
1,068,166	-				-0.2
1,068,166	-				+0.2
1,068,166	-				-0.1
1,068,196	-				+0.6
1,068,206	-				+0.2
1,068,217	+				-1.7
1,068,280	+		CCNA_00988	0.11	-0.1
1,068,288	-		CCNA_00988	0.11	+0.2
1,068,311	-		CCNA_00988	0.13	-0.9
1,068,324	+		CCNA_00988	0.14	-0.8
1,068,325	-		CCNA_00988	0.14	+0.7
1,068,342	-		CCNA_00988	0.15	-0.4
1,068,425	-		CCNA_00988	0.21	+1.7
1,068,425	-		CCNA_00988	0.21	+0.1
1,068,490	+		CCNA_00988	0.25	+0.7
1,068,523	-		CCNA_00988	0.27	-1.4
1,068,620	+		CCNA_00988	0.34	-2.3
1,068,620	+		CCNA_00988	0.34	-0.5
1,068,628	-		CCNA_00988	0.35	-0.3
1,068,638	-		CCNA_00988	0.35	-0.8
1,068,651	-		CCNA_00988	0.36	+0.6
1,068,651	-		CCNA_00988	0.36	-0.2
1,068,659	-		CCNA_00988	0.37	-0.6
1,068,727	-		CCNA_00988	0.42	-1.9
1,068,791	+		CCNA_00988	0.46	-2.4
1,068,821	+		CCNA_00988	0.48	-1.0
1,068,829	-		CCNA_00988	0.49	-1.7
1,068,829	-		CCNA_00988	0.49	-0.4
1,068,841	+		CCNA_00988	0.49	-1.8
1,068,849	-		CCNA_00988	0.50	-0.6
1,068,849	-		CCNA_00988	0.50	-0.9
1,068,851	+		CCNA_00988	0.50	-1.3
1,068,895	-		CCNA_00988	0.53	-0.3
1,068,928	-		CCNA_00988	0.56	-0.1
1,069,000	+		CCNA_00988	0.60	+0.1
1,069,048	+		CCNA_00988	0.64	-0.4
1,069,126	+		CCNA_00988	0.69	-1.6
1,069,126	+		CCNA_00988	0.69	-0.5
1,069,126	+		CCNA_00988	0.69	-1.0
1,069,126	+		CCNA_00988	0.69	+0.1
1,069,126	+		CCNA_00988	0.69	+0.6
1,069,152	-		CCNA_00988	0.71	-0.5
1,069,225	+		CCNA_00988	0.76	-0.5
1,069,225	+		CCNA_00988	0.76	-0.5
1,069,233	-		CCNA_00988	0.77	-0.3
1,069,334	+		CCNA_00988	0.84	-1.5
1,069,343	-		CCNA_00988	0.84	-1.5
1,069,344	+		CCNA_00988	0.84	+1.2
1,069,344	+		CCNA_00988	0.84	+1.6
1,069,358	-		CCNA_00988	0.85	-1.0
1,069,366	+		CCNA_00988	0.86	-1.4
1,069,434	-				-0.4
1,069,436	+				-1.0
1,069,451	-				-0.2
1,069,478	-				-0.7
1,069,478	-				-1.2
1,069,488	+				-2.8
1,069,488	+				-0.1
1,069,488	+				-0.3
1,069,488	+				-0.5
1,069,496	-				-0.3
1,069,496	-				-2.6
1,069,496	-				+2.3
1,069,496	-				-0.1
1,069,506	-				-0.8
1,069,532	+				-2.0
1,069,540	-				-2.5
1,069,546	-				-1.7
1,069,546	-				-0.1
1,069,572	-				-1.9
1,069,572	-				-2.7
1,069,578	-				-0.5
1,069,592	+				-0.8
1,069,609	-				-0.1
1,069,638	+				+0.5
1,069,638	+				+0.7
1,069,638	+				+1.1
1,069,646	-				-1.5
1,069,664	+				-0.8
1,069,672	-				-2.2
1,069,682	-				+0.6
1,069,692	-				-1.2
1,069,720	+				-2.9
1,069,728	-				-2.4
1,069,757	+				+0.1
1,069,776	-				-2.0
1,069,783	-				+1.0
1,069,795	+				+0.4
1,069,809	+				-1.3
1,069,817	+				-0.5
1,069,817	+				-1.9
1,069,825	-				-0.6
1,069,825	-				-1.8
1,069,881	+		CCNA_00989	0.12	-1.9
1,069,889	-		CCNA_00989	0.12	-1.0
1,069,891	+		CCNA_00989	0.12	+1.1
1,069,903	-		CCNA_00989	0.13	+0.2
1,069,922	-		CCNA_00989	0.14	+2.7
1,069,944	+		CCNA_00989	0.15	-0.1
1,069,963	-		CCNA_00989	0.16	-0.7
1,070,013	-		CCNA_00989	0.19	-1.3
1,070,025	+		CCNA_00989	0.19	-0.7
1,070,033	-		CCNA_00989	0.20	-0.5
1,070,033	-		CCNA_00989	0.20	+0.5
1,070,078	-		CCNA_00989	0.22	-0.2
1,070,110	+		CCNA_00989	0.24	-1.4
1,070,130	+		CCNA_00989	0.25	+0.1
1,070,140	+		CCNA_00989	0.25	-0.8
1,070,140	+		CCNA_00989	0.25	-0.4
1,070,140	+		CCNA_00989	0.25	+0.3
1,070,148	-		CCNA_00989	0.26	-1.3
1,070,148	-		CCNA_00989	0.26	-1.0
1,070,153	+		CCNA_00989	0.26	-0.6
1,070,186	-		CCNA_00989	0.28	-2.0
1,070,186	-		CCNA_00989	0.28	-0.7
1,070,191	+		CCNA_00989	0.28	+0.7
1,070,238	-		CCNA_00989	0.31	+2.7
1,070,265	+		CCNA_00989	0.32	-1.3
1,070,297	+		CCNA_00989	0.34	+1.7
1,070,305	-		CCNA_00989	0.34	-1.6
1,070,314	+		CCNA_00989	0.35	-1.5
1,070,314	+		CCNA_00989	0.35	-1.4
1,070,314	+		CCNA_00989	0.35	-2.4
1,070,314	+		CCNA_00989	0.35	-2.7
1,070,322	-		CCNA_00989	0.35	-1.1
1,070,322	-		CCNA_00989	0.35	-2.6
1,070,322	-		CCNA_00989	0.35	-3.0
1,070,322	-		CCNA_00989	0.35	-0.8
1,070,349	+		CCNA_00989	0.36	-1.6
1,070,352	-		CCNA_00989	0.37	+2.1
1,070,375	-		CCNA_00989	0.38	-0.9
1,070,433	-		CCNA_00989	0.41	-0.8
1,070,453	+		CCNA_00989	0.42	-1.1
1,070,478	+		CCNA_00989	0.43	+1.5
1,070,501	-		CCNA_00989	0.44	+0.2
1,070,530	+		CCNA_00989	0.46	+0.6
1,070,548	-		CCNA_00989	0.47	-2.5
1,070,548	-				+4.3
1,070,553	+		CCNA_00989	0.47	+1.5
1,070,553	-				+0.7