Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00724 and CCNA_00725 are separated by 200 nucleotides CCNA_00725 and CCNA_00726 are separated by 50 nucleotides CCNA_00726 and CCNA_00727 are separated by 156 nucleotides CCNA_00727 and CCNA_00728 are separated by 72 nucleotides
CCNA_00724: CCNA_00724 - hypothetical protein, at 780,321 to 780,749
_00724
CCNA_00725: CCNA_00725 - O6-methylguanine-DNA methyltransferase, at 780,950 to 781,612
_00725
CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970
_00726
CCNA_00727: CCNA_00727 - ribosomal-protein-alanine acetyltransferase, at 783,127 to 783,723
_00727
CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959
_00728
Position (kb) 781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 780.670 kb on - strand, within CCNA_00724 at 780.677 kb on - strand, within CCNA_00724 at 780.682 kb on - strand, within CCNA_00724 at 780.703 kb on - strand, within CCNA_00724 at 780.737 kb on + strand at 780.738 kb on + strand at 780.743 kb on + strand at 780.743 kb on + strand at 780.751 kb on - strand at 780.751 kb on - strand at 780.860 kb on + strand at 780.882 kb on + strand at 780.948 kb on + strand at 780.956 kb on - strand at 780.989 kb on + strand at 781.079 kb on - strand, within CCNA_00725 at 781.124 kb on + strand, within CCNA_00725 at 781.129 kb on + strand, within CCNA_00725 at 781.129 kb on + strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.137 kb on - strand, within CCNA_00725 at 781.148 kb on - strand, within CCNA_00725 at 781.166 kb on + strand, within CCNA_00725 at 781.174 kb on - strand, within CCNA_00725 at 781.220 kb on - strand, within CCNA_00725 at 781.220 kb on - strand, within CCNA_00725 at 781.225 kb on - strand, within CCNA_00725 at 781.317 kb on - strand, within CCNA_00725 at 781.356 kb on - strand, within CCNA_00725 at 781.394 kb on - strand, within CCNA_00725 at 781.409 kb on - strand, within CCNA_00725 at 781.418 kb on - strand, within CCNA_00725 at 781.450 kb on - strand, within CCNA_00725 at 781.481 kb on - strand, within CCNA_00725 at 781.513 kb on + strand, within CCNA_00725 at 781.613 kb on - strand at 781.689 kb on - strand at 781.689 kb on - strand at 781.717 kb on + strand at 781.718 kb on - strand at 781.736 kb on + strand at 781.762 kb on - strand at 781.770 kb on - strand at 781.772 kb on - strand at 781.783 kb on - strand at 781.797 kb on + strand, within CCNA_00726 at 781.817 kb on + strand, within CCNA_00726 at 781.817 kb on + strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.825 kb on - strand, within CCNA_00726 at 781.827 kb on + strand, within CCNA_00726 at 781.827 kb on + strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.835 kb on - strand, within CCNA_00726 at 781.848 kb on - strand, within CCNA_00726 at 781.861 kb on + strand, within CCNA_00726 at 781.897 kb on + strand, within CCNA_00726 at 781.910 kb on + strand, within CCNA_00726 at 781.918 kb on - strand, within CCNA_00726 at 781.923 kb on - strand, within CCNA_00726 at 781.934 kb on + strand, within CCNA_00726 at 781.981 kb on - strand, within CCNA_00726 at 782.022 kb on - strand, within CCNA_00726 at 782.036 kb on - strand, within CCNA_00726 at 782.040 kb on - strand, within CCNA_00726 at 782.063 kb on + strand, within CCNA_00726 at 782.070 kb on + strand, within CCNA_00726 at 782.164 kb on - strand, within CCNA_00726 at 782.175 kb on - strand, within CCNA_00726 at 782.175 kb on - strand, within CCNA_00726 at 782.186 kb on - strand, within CCNA_00726 at 782.210 kb on - strand, within CCNA_00726 at 782.234 kb on + strand, within CCNA_00726 at 782.254 kb on - strand, within CCNA_00726 at 782.260 kb on - strand, within CCNA_00726 at 782.265 kb on - strand, within CCNA_00726 at 782.279 kb on - strand at 782.279 kb on - strand, within CCNA_00726 at 782.349 kb on - strand, within CCNA_00726 at 782.386 kb on - strand, within CCNA_00726 at 782.421 kb on + strand, within CCNA_00726 at 782.429 kb on - strand, within CCNA_00726 at 782.429 kb on - strand, within CCNA_00726 at 782.483 kb on - strand, within CCNA_00726 at 782.490 kb on - strand, within CCNA_00726 at 782.490 kb on - strand, within CCNA_00726 at 782.507 kb on - strand, within CCNA_00726 at 782.507 kb on - strand, within CCNA_00726 at 782.512 kb on - strand, within CCNA_00726 at 782.517 kb on - strand, within CCNA_00726 at 782.525 kb on + strand, within CCNA_00726 at 782.613 kb on - strand, within CCNA_00726 at 782.650 kb on - strand, within CCNA_00726 at 782.702 kb on - strand, within CCNA_00726 at 782.723 kb on + strand, within CCNA_00726 at 782.723 kb on + strand, within CCNA_00726 at 782.724 kb on - strand, within CCNA_00726 at 782.731 kb on - strand, within CCNA_00726 at 782.746 kb on - strand, within CCNA_00726 at 782.752 kb on + strand, within CCNA_00726 at 782.755 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.760 kb on - strand, within CCNA_00726 at 782.838 kb on - strand, within CCNA_00726 at 782.881 kb on - strand at 782.926 kb on - strand at 782.927 kb on - strand at 782.929 kb on + strand at 782.954 kb on - strand at 782.959 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 783.028 kb on - strand at 783.038 kb on - strand at 783.067 kb on + strand at 783.067 kb on + strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.080 kb on - strand at 783.084 kb on + strand at 783.092 kb on - strand at 783.092 kb on - strand at 783.128 kb on + strand at 783.130 kb on - strand at 783.154 kb on - strand at 783.214 kb on + strand, within CCNA_00727 at 783.236 kb on + strand, within CCNA_00727 at 783.272 kb on + strand, within CCNA_00727 at 783.282 kb on + strand, within CCNA_00727 at 783.290 kb on - strand, within CCNA_00727 at 783.295 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.303 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.429 kb on + strand, within CCNA_00727 at 783.432 kb on - strand, within CCNA_00727 at 783.442 kb on - strand, within CCNA_00727 at 783.446 kb on + strand, within CCNA_00727 at 783.451 kb on + strand, within CCNA_00727 at 783.455 kb on - strand, within CCNA_00727 at 783.459 kb on - strand, within CCNA_00727 at 783.462 kb on + strand, within CCNA_00727 at 783.464 kb on - strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.639 kb on - strand, within CCNA_00727 at 783.656 kb on - strand, within CCNA_00727 at 783.705 kb on + strand at 783.736 kb on - strand at 783.737 kb on - strand at 783.775 kb on + strand at 783.783 kb on - strand at 783.783 kb on - strand at 783.802 kb on + strand at 783.826 kb on + strand at 783.845 kb on + strand at 783.924 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 780,670 - CCNA_00724 0.81 -0.9 780,677 - CCNA_00724 0.83 -0.8 780,682 - CCNA_00724 0.84 -1.3 780,703 - CCNA_00724 0.89 -1.1 780,737 + +1.2 780,738 + +1.3 780,743 + +1.1 780,743 + +1.5 780,751 - -1.7 780,751 - +0.2 780,860 + +0.1 780,882 + -1.6 780,948 + -0.7 780,956 - +0.7 780,989 + +1.8 781,079 - CCNA_00725 0.19 -0.5 781,124 + CCNA_00725 0.26 +1.7 781,129 + CCNA_00725 0.27 +0.5 781,129 + CCNA_00725 0.27 -0.8 781,137 - CCNA_00725 0.28 +0.5 781,137 - CCNA_00725 0.28 +0.4 781,137 - CCNA_00725 0.28 -0.6 781,148 - CCNA_00725 0.30 -0.1 781,166 + CCNA_00725 0.33 +0.7 781,174 - CCNA_00725 0.34 +1.4 781,220 - CCNA_00725 0.41 -0.2 781,220 - CCNA_00725 0.41 -0.2 781,225 - CCNA_00725 0.41 -0.3 781,317 - CCNA_00725 0.55 -0.5 781,356 - CCNA_00725 0.61 +0.6 781,394 - CCNA_00725 0.67 -0.1 781,409 - CCNA_00725 0.69 -0.4 781,418 - CCNA_00725 0.71 +0.5 781,450 - CCNA_00725 0.75 -1.5 781,481 - CCNA_00725 0.80 -0.4 781,513 + CCNA_00725 0.85 +3.0 781,613 - +1.3 781,689 - +1.6 781,689 - +1.7 781,717 + -1.7 781,718 - +1.0 781,736 + -0.1 781,762 - +1.1 781,770 - +0.6 781,772 - +0.6 781,783 - +0.9 781,797 + CCNA_00726 0.10 +0.1 781,817 + CCNA_00726 0.12 +1.3 781,817 + CCNA_00726 0.12 -2.0 781,825 - CCNA_00726 0.12 +1.7 781,825 - CCNA_00726 0.12 +1.2 781,825 - CCNA_00726 0.12 +0.2 781,827 + CCNA_00726 0.13 -0.6 781,827 + CCNA_00726 0.13 +0.2 781,835 - CCNA_00726 0.13 +1.0 781,835 - CCNA_00726 0.13 +0.6 781,835 - CCNA_00726 0.13 +1.4 781,848 - CCNA_00726 0.14 +0.9 781,861 + CCNA_00726 0.15 +0.4 781,897 + CCNA_00726 0.18 +0.8 781,910 + CCNA_00726 0.19 -1.7 781,918 - CCNA_00726 0.19 +0.5 781,923 - CCNA_00726 0.20 +0.1 781,934 + CCNA_00726 0.21 -0.7 781,981 - CCNA_00726 0.24 +1.0 782,022 - CCNA_00726 0.27 +1.2 782,036 - CCNA_00726 0.29 +1.1 782,040 - CCNA_00726 0.29 +1.0 782,063 + CCNA_00726 0.31 -0.9 782,070 + CCNA_00726 0.31 +0.2 782,164 - CCNA_00726 0.38 +1.2 782,175 - CCNA_00726 0.39 +0.4 782,175 - CCNA_00726 0.39 +1.1 782,186 - CCNA_00726 0.40 +1.1 782,210 - CCNA_00726 0.42 +0.8 782,234 + CCNA_00726 0.44 +0.7 782,254 - CCNA_00726 0.45 +0.3 782,260 - CCNA_00726 0.46 +0.3 782,265 - CCNA_00726 0.46 +0.2 782,279 - +1.4 782,279 - CCNA_00726 0.47 +0.9 782,349 - CCNA_00726 0.52 +0.7 782,386 - CCNA_00726 0.55 +0.9 782,421 + CCNA_00726 0.58 -0.3 782,429 - CCNA_00726 0.59 +0.6 782,429 - CCNA_00726 0.59 +0.4 782,483 - CCNA_00726 0.63 +0.4 782,490 - CCNA_00726 0.63 +1.6 782,490 - CCNA_00726 0.63 -1.1 782,507 - CCNA_00726 0.65 +0.0 782,507 - CCNA_00726 0.65 +0.2 782,512 - CCNA_00726 0.65 +1.7 782,517 - CCNA_00726 0.65 +0.9 782,525 + CCNA_00726 0.66 -0.4 782,613 - CCNA_00726 0.73 +1.4 782,650 - CCNA_00726 0.75 -0.6 782,702 - CCNA_00726 0.79 +0.7 782,723 + CCNA_00726 0.81 +0.2 782,723 + CCNA_00726 0.81 -1.7 782,724 - CCNA_00726 0.81 +0.3 782,731 - CCNA_00726 0.82 +0.4 782,746 - CCNA_00726 0.83 +0.8 782,752 + CCNA_00726 0.83 -0.6 782,755 - CCNA_00726 0.83 +1.9 782,760 - CCNA_00726 0.84 +0.8 782,760 - CCNA_00726 0.84 -0.7 782,760 - CCNA_00726 0.84 -0.8 782,760 - CCNA_00726 0.84 +0.2 782,760 - CCNA_00726 0.84 +2.3 782,760 - CCNA_00726 0.84 +1.2 782,838 - CCNA_00726 0.90 +0.4 782,881 - +1.3 782,926 - +1.5 782,927 - -0.4 782,929 + -0.1 782,954 - +0.6 782,959 + -0.4 782,965 + -0.5 782,965 + +0.2 782,965 + +0.9 782,965 + +0.2 782,965 + -1.0 782,973 - -0.7 782,973 - -0.5 782,973 - -1.5 782,973 - -0.9 783,028 - +2.3 783,038 - +0.5 783,067 + -1.1 783,067 + +0.2 783,075 - +0.4 783,075 - -1.5 783,075 - -1.7 783,075 - -0.2 783,075 - +0.8 783,075 - -0.5 783,080 - +1.0 783,084 + -1.5 783,092 - +1.7 783,092 - +0.3 783,128 + -0.5 783,130 - +0.5 783,154 - -1.9 783,214 + CCNA_00727 0.15 +1.7 783,236 + CCNA_00727 0.18 +1.3 783,272 + CCNA_00727 0.24 +0.5 783,282 + CCNA_00727 0.26 +1.6 783,290 - CCNA_00727 0.27 -0.9 783,295 + CCNA_00727 0.28 -0.4 783,300 + CCNA_00727 0.29 +0.1 783,300 + CCNA_00727 0.29 +0.4 783,303 - CCNA_00727 0.29 -0.1 783,387 - CCNA_00727 0.44 -1.0 783,387 - CCNA_00727 0.44 +0.0 783,429 + CCNA_00727 0.51 +1.0 783,432 - CCNA_00727 0.51 -1.9 783,442 - CCNA_00727 0.53 -0.7 783,446 + CCNA_00727 0.53 -0.1 783,451 + CCNA_00727 0.54 +1.0 783,455 - CCNA_00727 0.55 +2.1 783,459 - CCNA_00727 0.56 +1.4 783,462 + CCNA_00727 0.56 +0.9 783,464 - CCNA_00727 0.56 -1.2 783,504 + CCNA_00727 0.63 +0.8 783,504 + CCNA_00727 0.63 +0.9 783,504 + CCNA_00727 0.63 +1.2 783,523 + CCNA_00727 0.66 +0.6 783,523 + CCNA_00727 0.66 +0.8 783,528 + CCNA_00727 0.67 +1.5 783,528 + CCNA_00727 0.67 +1.3 783,605 + CCNA_00727 0.80 +0.2 783,605 + CCNA_00727 0.80 +1.3 783,639 - CCNA_00727 0.86 -0.1 783,656 - CCNA_00727 0.89 -0.3 783,705 + -0.5 783,736 - +0.5 783,737 - +0.0 783,775 + +0.5 783,783 - -1.2 783,783 - -1.7 783,802 + -0.8 783,826 + +0.5 783,845 + +0.4 783,924 + CCNA_00728 0.11 +1.0 783,953 + CCNA_00728 0.13 -0.1 783,953 + CCNA_00728 0.13 +0.2
Or see this region's nucleotide sequence