Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00195

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00193 and CCNA_00194 are separated by 1 nucleotidesCCNA_00194 and CCNA_00195 are separated by 141 nucleotidesCCNA_00195 and CCNA_00196 overlap by 4 nucleotides CCNA_00193: CCNA_00193 - 3-isopropylmalate dehydrogenase, at 206,989 to 208,041 _00193 CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345 _00194 CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095 _00195 CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 Position (kb) 208 209 210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 207.549 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.571 kb on - strand, within CCNA_00193at 207.571 kb on - strand, within CCNA_00193at 207.606 kb on + strand, within CCNA_00193at 207.614 kb on - strand, within CCNA_00193at 207.672 kb on - strand, within CCNA_00193at 207.677 kb on + strand, within CCNA_00193at 207.677 kb on + strand, within CCNA_00193at 207.685 kb on - strand, within CCNA_00193at 207.685 kb on - strand, within CCNA_00193at 207.687 kb on + strand, within CCNA_00193at 207.712 kb on + strand, within CCNA_00193at 207.720 kb on - strand, within CCNA_00193at 207.728 kb on + strand, within CCNA_00193at 207.764 kb on + strand, within CCNA_00193at 207.774 kb on + strand, within CCNA_00193at 207.775 kb on + strand, within CCNA_00193at 207.778 kb on + strand, within CCNA_00193at 207.782 kb on - strand, within CCNA_00193at 207.835 kb on - strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.859 kb on + strand, within CCNA_00193at 207.867 kb on + strand, within CCNA_00193at 207.914 kb on - strand, within CCNA_00193at 207.925 kb on + strand, within CCNA_00193at 207.944 kb on + strandat 207.944 kb on + strandat 207.944 kb on + strandat 207.945 kb on - strandat 207.951 kb on + strandat 207.951 kb on + strandat 207.951 kb on + strandat 207.952 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.979 kb on + strandat 207.996 kb on + strandat 208.004 kb on - strandat 208.004 kb on - strandat 208.004 kb on - strandat 208.040 kb on + strandat 208.227 kb on + strand, within CCNA_00194at 208.227 kb on + strand, within CCNA_00194at 208.234 kb on - strand, within CCNA_00194at 208.241 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.316 kb on - strandat 208.319 kb on + strandat 208.342 kb on - strandat 208.347 kb on - strandat 208.348 kb on - strandat 208.442 kb on + strandat 208.482 kb on - strandat 208.482 kb on - strandat 208.497 kb on + strandat 208.500 kb on - strandat 208.505 kb on - strandat 208.507 kb on + strandat 208.524 kb on + strandat 208.573 kb on + strand, within CCNA_00195at 208.645 kb on + strand, within CCNA_00195at 208.692 kb on + strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.722 kb on - strand, within CCNA_00195at 208.723 kb on + strand, within CCNA_00195at 208.731 kb on - strand, within CCNA_00195at 208.736 kb on - strand, within CCNA_00195at 208.748 kb on - strand, within CCNA_00195at 208.896 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.908 kb on + strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.931 kb on + strand, within CCNA_00195at 208.939 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.987 kb on - strand, within CCNA_00195at 208.996 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.014 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.032 kb on - strand, within CCNA_00195at 209.042 kb on - strandat 209.081 kb on + strandat 209.082 kb on + strandat 209.095 kb on - strandat 209.181 kb on - strandat 209.229 kb on - strandat 209.231 kb on - strandat 209.250 kb on + strand, within CCNA_00196at 209.252 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.332 kb on + strand, within CCNA_00196at 209.340 kb on - strand, within CCNA_00196at 209.346 kb on - strand, within CCNA_00196at 209.367 kb on + strand, within CCNA_00196at 209.375 kb on - strand, within CCNA_00196at 209.384 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.405 kb on + strand, within CCNA_00196at 209.419 kb on + strand, within CCNA_00196at 209.456 kb on + strand, within CCNA_00196at 209.466 kb on - strand, within CCNA_00196at 209.544 kb on - strand, within CCNA_00196at 209.550 kb on + strand, within CCNA_00196at 209.586 kb on - strand, within CCNA_00196at 209.621 kb on - strand, within CCNA_00196at 209.657 kb on - strand, within CCNA_00196at 209.673 kb on + strand, within CCNA_00196at 209.673 kb on + strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.733 kb on - strand, within CCNA_00196at 209.751 kb on - strand, within CCNA_00196at 209.755 kb on + strand, within CCNA_00196at 209.755 kb on + strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.778 kb on - strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.808 kb on - strand, within CCNA_00196at 209.868 kb on + strand, within CCNA_00196at 209.868 kb on + strand, within CCNA_00196at 209.882 kb on + strand, within CCNA_00196at 209.890 kb on - strand, within CCNA_00196at 209.891 kb on - strand, within CCNA_00196at 209.917 kb on + strand, within CCNA_00196at 209.945 kb on - strand, within CCNA_00196at 209.972 kb on - strand, within CCNA_00196at 209.978 kb on - strand, within CCNA_00196at 210.019 kb on + strand, within CCNA_00196at 210.029 kb on + strand, within CCNA_00196at 210.031 kb on - strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.052 kb on + strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.062 kb on + strand, within CCNA_00196at 210.069 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.070 kb on - strand, within CCNA_00196at 210.085 kb on - strand, within CCNA_00196

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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207,549 + CCNA_00193 0.53 -2.4
207,563 + CCNA_00193 0.55 -2.6
207,563 + CCNA_00193 0.55 +0.3
207,563 + CCNA_00193 0.55 -2.2
207,563 + CCNA_00193 0.55 -2.7
207,571 - CCNA_00193 0.55 -1.5
207,571 - CCNA_00193 0.55 -2.9
207,606 + CCNA_00193 0.59 -0.5
207,614 - CCNA_00193 0.59 -3.6
207,672 - CCNA_00193 0.65 -2.5
207,677 + CCNA_00193 0.65 -2.0
207,677 + CCNA_00193 0.65 -2.3
207,685 - CCNA_00193 0.66 -2.7
207,685 - CCNA_00193 0.66 -1.3
207,687 + CCNA_00193 0.66 -1.0
207,712 + CCNA_00193 0.69 -2.6
207,720 - CCNA_00193 0.69 -2.2
207,728 + CCNA_00193 0.70 -0.9
207,764 + CCNA_00193 0.74 -0.7
207,774 + CCNA_00193 0.75 -2.5
207,775 + CCNA_00193 0.75 -2.9
207,778 + CCNA_00193 0.75 -0.4
207,782 - CCNA_00193 0.75 -2.1
207,835 - CCNA_00193 0.80 -2.0
207,844 + CCNA_00193 0.81 -3.4
207,844 + CCNA_00193 0.81 -1.9
207,844 + CCNA_00193 0.81 -0.3
207,852 - CCNA_00193 0.82 -1.9
207,852 - CCNA_00193 0.82 -1.0
207,852 - CCNA_00193 0.82 -3.7
207,852 - CCNA_00193 0.82 -2.0
207,859 + CCNA_00193 0.83 -0.8
207,867 + CCNA_00193 0.83 -1.0
207,914 - CCNA_00193 0.88 -2.7
207,925 + CCNA_00193 0.89 -1.2
207,944 + -0.5
207,944 + -0.8
207,944 + -1.5
207,945 - -0.9
207,951 + -3.5
207,951 + -1.6
207,951 + -2.9
207,952 - -1.6
207,959 - -3.8
207,959 - -3.7
207,959 - +0.7
207,959 - -0.5
207,979 + -3.3
207,996 + -0.7
208,004 - -3.1
208,004 - -1.3
208,004 - -3.4
208,040 + +1.5
208,227 + CCNA_00194 0.61 -0.1
208,227 + CCNA_00194 0.61 -0.5
208,234 - CCNA_00194 0.63 -0.7
208,241 + CCNA_00194 0.65 +0.8
208,260 + CCNA_00194 0.72 -0.6
208,260 + CCNA_00194 0.72 -1.4
208,260 + CCNA_00194 0.72 -0.9
208,260 + CCNA_00194 0.72 +0.3
208,260 + CCNA_00194 0.72 +0.0
208,268 - CCNA_00194 0.74 -0.0
208,268 - CCNA_00194 0.74 +0.4
208,268 - CCNA_00194 0.74 +1.3
208,268 - CCNA_00194 0.74 +0.5
208,316 - +0.6
208,319 + -1.0
208,342 - -1.0
208,347 - +1.0
208,348 - +0.9
208,442 + -1.7
208,482 - +1.0
208,482 - +1.0
208,497 + -0.9
208,500 - +1.4
208,505 - +3.0
208,507 + -2.5
208,524 + +0.5
208,573 + CCNA_00195 0.14 -2.5
208,645 + CCNA_00195 0.26 -1.6
208,692 + CCNA_00195 0.34 -0.5
208,712 - CCNA_00195 0.37 -0.2
208,712 - CCNA_00195 0.37 -2.1
208,722 - CCNA_00195 0.39 -1.4
208,723 + CCNA_00195 0.39 -1.2
208,731 - CCNA_00195 0.40 -2.0
208,736 - CCNA_00195 0.41 -2.9
208,748 - CCNA_00195 0.43 -2.3
208,896 + CCNA_00195 0.67 -2.6
208,898 + CCNA_00195 0.67 +0.2
208,898 + CCNA_00195 0.67 -0.4
208,898 + CCNA_00195 0.67 -4.0
208,898 + CCNA_00195 0.67 -1.3
208,898 + CCNA_00195 0.67 -3.1
208,898 + CCNA_00195 0.67 -1.2
208,906 - CCNA_00195 0.69 -1.4
208,906 - CCNA_00195 0.69 -0.8
208,908 + CCNA_00195 0.69 -2.3
208,916 - CCNA_00195 0.70 -2.0
208,916 - CCNA_00195 0.70 -1.3
208,916 - CCNA_00195 0.70 +0.5
208,931 + CCNA_00195 0.73 -2.6
208,939 - CCNA_00195 0.74 -2.3
208,970 - CCNA_00195 0.79 -1.2
208,970 - CCNA_00195 0.79 -1.2
208,987 - CCNA_00195 0.82 -3.3
208,996 + CCNA_00195 0.84 -2.0
209,001 + CCNA_00195 0.84 -0.9
209,001 + CCNA_00195 0.84 -3.6
209,001 + CCNA_00195 0.84 -2.3
209,009 - CCNA_00195 0.86 -4.4
209,009 - CCNA_00195 0.86 -2.2
209,009 - CCNA_00195 0.86 -1.7
209,012 - CCNA_00195 0.86 -3.3
209,012 - CCNA_00195 0.86 -1.3
209,012 - CCNA_00195 0.86 -1.9
209,014 + CCNA_00195 0.87 -1.7
209,019 + CCNA_00195 0.87 -3.3
209,019 + CCNA_00195 0.87 -3.1
209,022 - CCNA_00195 0.88 -0.4
209,032 - CCNA_00195 0.89 -2.0
209,042 - -2.7
209,081 + -2.4
209,082 + -1.0
209,095 - -1.5
209,181 - -2.6
209,229 - -0.6
209,231 - -1.3
209,250 + CCNA_00196 0.11 -2.3
209,252 - CCNA_00196 0.11 -1.7
209,326 - CCNA_00196 0.16 -1.6
209,326 - CCNA_00196 0.16 -0.5
209,332 + CCNA_00196 0.17 -2.2
209,340 - CCNA_00196 0.17 -0.9
209,346 - CCNA_00196 0.18 -0.2
209,367 + CCNA_00196 0.19 -4.6
209,375 - CCNA_00196 0.20 -1.2
209,384 + CCNA_00196 0.20 -1.3
209,390 + CCNA_00196 0.21 -1.8
209,390 + CCNA_00196 0.21 -3.3
209,390 + CCNA_00196 0.21 -0.2
209,392 - CCNA_00196 0.21 -0.3
209,392 - CCNA_00196 0.21 +0.7
209,392 - CCNA_00196 0.21 -3.5
209,392 - CCNA_00196 0.21 -0.3
209,398 - CCNA_00196 0.21 -1.2
209,398 - CCNA_00196 0.21 -2.3
209,398 - CCNA_00196 0.21 +0.7
209,398 - CCNA_00196 0.21 -1.2
209,398 - CCNA_00196 0.21 -0.3
209,398 - CCNA_00196 0.21 -1.5
209,398 - CCNA_00196 0.21 -1.2
209,398 - CCNA_00196 0.21 -2.7
209,405 + CCNA_00196 0.22 +0.7
209,419 + CCNA_00196 0.23 -1.0
209,456 + CCNA_00196 0.25 -1.9
209,466 - CCNA_00196 0.26 -2.3
209,544 - CCNA_00196 0.31 -0.7
209,550 + CCNA_00196 0.32 +0.3
209,586 - CCNA_00196 0.34 -1.1
209,621 - CCNA_00196 0.37 -1.3
209,657 - CCNA_00196 0.39 -1.4
209,673 + CCNA_00196 0.40 -0.5
209,673 + CCNA_00196 0.40 -0.0
209,709 - CCNA_00196 0.43 -1.0
209,709 - CCNA_00196 0.43 -0.7
209,709 - CCNA_00196 0.43 -2.9
209,733 - CCNA_00196 0.45 -1.1
209,751 - CCNA_00196 0.46 -0.9
209,755 + CCNA_00196 0.46 -1.9
209,755 + CCNA_00196 0.46 -2.8
209,763 - CCNA_00196 0.47 -2.3
209,763 - CCNA_00196 0.47 -2.3
209,763 - CCNA_00196 0.47 -1.5
209,763 - CCNA_00196 0.47 -1.6
209,763 - CCNA_00196 0.47 -0.7
209,778 - CCNA_00196 0.48 -2.6
209,793 + CCNA_00196 0.49 -2.8
209,793 + CCNA_00196 0.49 -3.0
209,793 + CCNA_00196 0.49 +0.3
209,808 - CCNA_00196 0.50 -0.6
209,868 + CCNA_00196 0.54 -0.8
209,868 + CCNA_00196 0.54 -1.9
209,882 + CCNA_00196 0.55 -1.9
209,890 - CCNA_00196 0.55 -2.6
209,891 - CCNA_00196 0.55 -0.8
209,917 + CCNA_00196 0.57 -2.2
209,945 - CCNA_00196 0.59 -1.3
209,972 - CCNA_00196 0.61 -1.3
209,978 - CCNA_00196 0.62 -1.7
210,019 + CCNA_00196 0.64 -3.2
210,029 + CCNA_00196 0.65 -2.3
210,031 - CCNA_00196 0.65 -1.2
210,051 + CCNA_00196 0.67 -0.4
210,051 + CCNA_00196 0.67 -1.5
210,052 + CCNA_00196 0.67 -2.5
210,059 - CCNA_00196 0.67 -3.1
210,059 - CCNA_00196 0.67 -1.0
210,059 - CCNA_00196 0.67 -1.3
210,059 - CCNA_00196 0.67 -2.8
210,059 - CCNA_00196 0.67 -2.4
210,059 - CCNA_00196 0.67 -1.4
210,062 + CCNA_00196 0.67 -2.0
210,069 - CCNA_00196 0.68 -2.8
210,070 - CCNA_00196 0.68 -1.3
210,070 - CCNA_00196 0.68 -1.5
210,070 - CCNA_00196 0.68 -1.7
210,085 - CCNA_00196 0.69 -2.3

Or see this region's nucleotide sequence