Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12755

Experiment: R2A with nitrite 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 3 mM
3,176,259	+				-0.5
3,176,353	+		CA265_RS12750	0.15	+1.6
3,176,354	-		CA265_RS12750	0.15	+0.2
3,176,403	+		CA265_RS12750	0.21	-0.9
3,176,424	+		CA265_RS12750	0.24	+1.1
3,176,424	+		CA265_RS12750	0.24	+0.2
3,176,429	+		CA265_RS12750	0.24	-0.0
3,176,447	+		CA265_RS12750	0.26	-0.2
3,176,500	+		CA265_RS12750	0.32	+0.6
3,176,543	+		CA265_RS12750	0.37	+0.8
3,176,543	+		CA265_RS12750	0.37	+0.1
3,176,544	-		CA265_RS12750	0.37	+0.3
3,176,609	-		CA265_RS12750	0.45	+0.2
3,176,627	-		CA265_RS12750	0.47	-0.1
3,176,630	+		CA265_RS12750	0.47	-0.1
3,176,876	+		CA265_RS12750	0.76	-1.6
3,176,877	-		CA265_RS12750	0.76	-0.2
3,176,950	+		CA265_RS12750	0.84	+0.2
3,176,951	-		CA265_RS12750	0.84	+0.0
3,176,951	-		CA265_RS12750	0.84	-0.8
3,176,954	+		CA265_RS12750	0.85	-0.1
3,176,961	+		CA265_RS12750	0.85	-0.1
3,176,981	+		CA265_RS12750	0.88	-0.8
3,176,981	+		CA265_RS12750	0.88	-0.2
3,176,981	+		CA265_RS12750	0.88	-0.6
3,177,076	-				+0.2
3,177,131	-				+0.1
3,177,131	-				+2.4
3,177,143	+				-0.1
3,177,152	-				-0.5
3,177,183	-				-0.3
3,177,184	+				+0.2
3,177,184	+				+0.1
3,177,196	-				+0.5
3,177,264	+				-0.3
3,177,265	-				-0.8
3,177,379	+		CA265_RS12755	0.19	+0.8
3,177,422	-		CA265_RS12755	0.23	+0.3
3,177,461	+		CA265_RS12755	0.27	+1.2
3,177,461	+		CA265_RS12755	0.27	+1.1
3,177,461	+		CA265_RS12755	0.27	+0.3
3,177,513	+		CA265_RS12755	0.32	-0.6
3,177,683	-		CA265_RS12755	0.48	+0.2
3,177,694	-		CA265_RS12755	0.49	+0.6
3,177,721	+		CA265_RS12755	0.52	-0.0
3,177,721	+		CA265_RS12755	0.52	+0.9
3,177,731	+		CA265_RS12755	0.53	-1.5
3,177,731	+		CA265_RS12755	0.53	+0.8
3,177,732	-		CA265_RS12755	0.53	+0.1
3,177,732	-		CA265_RS12755	0.53	+1.2
3,177,738	+		CA265_RS12755	0.53	+0.6
3,177,751	+		CA265_RS12755	0.55	-0.4
3,177,751	+		CA265_RS12755	0.55	+0.3
3,177,752	-		CA265_RS12755	0.55	-0.3
3,177,784	-		CA265_RS12755	0.58	-0.1
3,177,818	-		CA265_RS12755	0.61	-0.0
3,177,843	-		CA265_RS12755	0.63	-0.2
3,177,856	-		CA265_RS12755	0.65	-0.2
3,177,878	+		CA265_RS12755	0.67	+1.5
3,177,878	+		CA265_RS12755	0.67	+0.4
3,177,878	+		CA265_RS12755	0.67	+0.3
3,177,879	-		CA265_RS12755	0.67	-0.4
3,177,899	-		CA265_RS12755	0.69	-1.0
3,177,952	+		CA265_RS12755	0.74	+0.2
3,177,957	+		CA265_RS12755	0.74	+0.6
3,177,958	-		CA265_RS12755	0.74	+0.0
3,177,958	-		CA265_RS12755	0.74	+0.8
3,177,987	+		CA265_RS12755	0.77	-0.3
3,177,987	+		CA265_RS12755	0.77	-0.4
3,177,988	-		CA265_RS12755	0.77	-0.0
3,178,018	+		CA265_RS12755	0.80	+1.6
3,178,147	+				+0.4
3,178,220	-				-0.9
3,178,318	+				-0.2
3,178,372	+				-0.0
3,178,414	+				+0.9
3,178,415	-				+0.4
3,178,415	-				+0.2
3,178,416	+				-0.4
3,178,423	+				-0.0
3,178,424	-				-0.5
3,178,424	-				+0.1
3,178,436	-				-0.6
3,178,491	-				-0.6
3,178,526	-				+1.4
3,178,596	+				-0.8