Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22645

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22640 and BPHYT_RS22645 overlap by 4 nucleotidesBPHYT_RS22645 and BPHYT_RS22650 are separated by 481 nucleotides BPHYT_RS22640: BPHYT_RS22640 - hydroxyproline-2-epimerase, at 635,888 to 636,844 _RS22640 BPHYT_RS22645: BPHYT_RS22645 - D-amino acid oxidase, at 636,841 to 637,968 _RS22645 BPHYT_RS22650: BPHYT_RS22650 - pyridine nucleotide-disulfide oxidoreductase, at 638,450 to 639,736 _RS22650 Position (kb) 636 637 638Strain fitness (log2 ratio) -1 0 1at 635.911 kb on + strandat 635.912 kb on - strandat 636.593 kb on + strand, within BPHYT_RS22640at 636.719 kb on + strand, within BPHYT_RS22640at 636.773 kb on + strandat 636.773 kb on + strandat 637.027 kb on + strand, within BPHYT_RS22645at 637.273 kb on + strand, within BPHYT_RS22645at 637.273 kb on + strand, within BPHYT_RS22645at 637.416 kb on - strand, within BPHYT_RS22645at 637.416 kb on - strand, within BPHYT_RS22645at 637.416 kb on - strand, within BPHYT_RS22645at 637.543 kb on + strand, within BPHYT_RS22645at 637.705 kb on + strand, within BPHYT_RS22645at 637.705 kb on + strand, within BPHYT_RS22645at 637.706 kb on - strand, within BPHYT_RS22645at 638.015 kb on - strandat 638.113 kb on - strandat 638.238 kb on + strandat 638.239 kb on - strandat 638.253 kb on + strandat 638.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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635,911 + +0.1
635,912 - -0.7
636,593 + BPHYT_RS22640 0.74 -0.6
636,719 + BPHYT_RS22640 0.87 +0.2
636,773 + -0.1
636,773 + +0.4
637,027 + BPHYT_RS22645 0.16 -0.8
637,273 + BPHYT_RS22645 0.38 -0.7
637,273 + BPHYT_RS22645 0.38 -0.8
637,416 - BPHYT_RS22645 0.51 -0.9
637,416 - BPHYT_RS22645 0.51 -0.6
637,416 - BPHYT_RS22645 0.51 +1.1
637,543 + BPHYT_RS22645 0.62 -0.2
637,705 + BPHYT_RS22645 0.77 -1.1
637,705 + BPHYT_RS22645 0.77 +0.3
637,706 - BPHYT_RS22645 0.77 -0.9
638,015 - +0.2
638,113 - +1.5
638,238 + -0.5
638,239 - -1.2
638,253 + -1.0
638,253 + -1.0

Or see this region's nucleotide sequence