Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20030

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20025 and BPHYT_RS20030 are separated by 81 nucleotidesBPHYT_RS20030 and BPHYT_RS20035 are separated by 36 nucleotides BPHYT_RS20025: BPHYT_RS20025 - crotonase, at 36,761 to 37,588 _RS20025 BPHYT_RS20030: BPHYT_RS20030 - salicylaldehyde dehydrogenase, at 37,670 to 39,121 _RS20030 BPHYT_RS20035: BPHYT_RS20035 - feruloyl-CoA synthase, at 39,158 to 41,059 _RS20035 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -1 0 1at 37.466 kb on + strand, within BPHYT_RS20025at 37.473 kb on - strand, within BPHYT_RS20025at 38.957 kb on - strand, within BPHYT_RS20030at 39.175 kb on - strandat 39.267 kb on - strandat 39.307 kb on + strandat 39.608 kb on - strand, within BPHYT_RS20035at 40.037 kb on + strand, within BPHYT_RS20035at 40.038 kb on - strand, within BPHYT_RS20035at 40.039 kb on + strand, within BPHYT_RS20035at 40.040 kb on - strand, within BPHYT_RS20035

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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37,466 + BPHYT_RS20025 0.85 +0.2
37,473 - BPHYT_RS20025 0.86 -0.1
38,957 - BPHYT_RS20030 0.89 +0.7
39,175 - +0.5
39,267 - +0.4
39,307 + +0.5
39,608 - BPHYT_RS20035 0.24 +0.2
40,037 + BPHYT_RS20035 0.46 +0.2
40,038 - BPHYT_RS20035 0.46 +0.3
40,039 + BPHYT_RS20035 0.46 -0.2
40,040 - BPHYT_RS20035 0.46 +1.3

Or see this region's nucleotide sequence