Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16770

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16760 and BPHYT_RS16765 are separated by 404 nucleotidesBPHYT_RS16765 and BPHYT_RS16770 are separated by 15 nucleotidesBPHYT_RS16770 and BPHYT_RS16775 are separated by 232 nucleotides BPHYT_RS16760: BPHYT_RS16760 - hypothetical protein, at 3,804,536 to 3,804,973 _RS16760 BPHYT_RS16765: BPHYT_RS16765 - membrane protein, at 3,805,378 to 3,805,794 _RS16765 BPHYT_RS16770: BPHYT_RS16770 - gamma-glutamyl phosphate reductase, at 3,805,810 to 3,807,081 _RS16770 BPHYT_RS16775: BPHYT_RS16775 - DNA polymerase III subunit delta, at 3,807,314 to 3,808,432 _RS16775 Position (kb) 3805 3806 3807 3808Strain fitness (log2 ratio) -1 0 1at 3804.828 kb on + strand, within BPHYT_RS16760at 3804.829 kb on - strand, within BPHYT_RS16760at 3804.830 kb on + strand, within BPHYT_RS16760at 3805.135 kb on - strandat 3805.223 kb on + strandat 3805.257 kb on - strandat 3805.258 kb on + strandat 3805.258 kb on + strandat 3805.259 kb on - strandat 3805.259 kb on - strandat 3805.275 kb on + strandat 3805.321 kb on - strandat 3805.361 kb on - strandat 3807.153 kb on + strandat 3807.153 kb on + strandat 3807.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,804,828 + BPHYT_RS16760 0.67 +0.1
3,804,829 - BPHYT_RS16760 0.67 +0.4
3,804,830 + BPHYT_RS16760 0.67 +0.2
3,805,135 - +0.1
3,805,223 + -0.0
3,805,257 - +0.2
3,805,258 + +0.1
3,805,258 + +0.3
3,805,259 - -0.0
3,805,259 - +0.4
3,805,275 + +0.2
3,805,321 - -0.3
3,805,361 - -0.4
3,807,153 + -1.3
3,807,153 + +0.0
3,807,205 + -0.9

Or see this region's nucleotide sequence