Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14300 and BPHYT_RS14305 are separated by 105 nucleotides BPHYT_RS14305 and BPHYT_RS14310 are separated by 62 nucleotides BPHYT_RS14310 and BPHYT_RS14315 are separated by 217 nucleotides BPHYT_RS14315 and BPHYT_RS14320 are separated by 144 nucleotides
BPHYT_RS14300: BPHYT_RS14300 - tRNA-Cys, at 3,267,188 to 3,267,261
_RS14300
BPHYT_RS14305: BPHYT_RS14305 - tRNA-Gly, at 3,267,367 to 3,267,442
_RS14305
BPHYT_RS14310: BPHYT_RS14310 - tRNA-Gly, at 3,267,505 to 3,267,580
_RS14310
BPHYT_RS14315: BPHYT_RS14315 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,267,798 to 3,268,391
_RS14315
BPHYT_RS14320: BPHYT_RS14320 - UvrABC system protein C, at 3,268,536 to 3,270,731
_RS14320
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-1
0
1 at 3266.853 kb on + strand at 3266.853 kb on + strand at 3266.859 kb on - strand at 3266.972 kb on + strand at 3266.973 kb on - strand at 3267.177 kb on - strand at 3267.727 kb on - strand at 3268.439 kb on - strand at 3268.552 kb on + strand at 3269.138 kb on - strand, within BPHYT_RS14320 at 3269.138 kb on - strand, within BPHYT_RS14320 at 3269.180 kb on - strand, within BPHYT_RS14320 at 3269.210 kb on - strand, within BPHYT_RS14320 at 3269.210 kb on - strand, within BPHYT_RS14320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,266,853 + +0.1 3,266,853 + -0.0 3,266,859 - -0.6 3,266,972 + +0.2 3,266,973 - -0.7 3,267,177 - -0.7 3,267,727 - -0.5 3,268,439 - -0.6 3,268,552 + -0.3 3,269,138 - BPHYT_RS14320 0.27 +0.8 3,269,138 - BPHYT_RS14320 0.27 -0.2 3,269,180 - BPHYT_RS14320 0.29 -0.6 3,269,210 - BPHYT_RS14320 0.31 -0.5 3,269,210 - BPHYT_RS14320 0.31 +0.3
Or see this region's nucleotide sequence