Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14315

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14300 and BPHYT_RS14305 are separated by 105 nucleotidesBPHYT_RS14305 and BPHYT_RS14310 are separated by 62 nucleotidesBPHYT_RS14310 and BPHYT_RS14315 are separated by 217 nucleotidesBPHYT_RS14315 and BPHYT_RS14320 are separated by 144 nucleotides BPHYT_RS14300: BPHYT_RS14300 - tRNA-Cys, at 3,267,188 to 3,267,261 _RS14300 BPHYT_RS14305: BPHYT_RS14305 - tRNA-Gly, at 3,267,367 to 3,267,442 _RS14305 BPHYT_RS14310: BPHYT_RS14310 - tRNA-Gly, at 3,267,505 to 3,267,580 _RS14310 BPHYT_RS14315: BPHYT_RS14315 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,267,798 to 3,268,391 _RS14315 BPHYT_RS14320: BPHYT_RS14320 - UvrABC system protein C, at 3,268,536 to 3,270,731 _RS14320 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -1 0 1at 3266.853 kb on + strandat 3266.853 kb on + strandat 3266.859 kb on - strandat 3266.972 kb on + strandat 3266.973 kb on - strandat 3267.177 kb on - strandat 3267.727 kb on - strandat 3268.439 kb on - strandat 3268.552 kb on + strandat 3269.138 kb on - strand, within BPHYT_RS14320at 3269.138 kb on - strand, within BPHYT_RS14320at 3269.180 kb on - strand, within BPHYT_RS14320at 3269.210 kb on - strand, within BPHYT_RS14320at 3269.210 kb on - strand, within BPHYT_RS14320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,266,853 + +0.1
3,266,853 + -0.0
3,266,859 - -0.6
3,266,972 + +0.2
3,266,973 - -0.7
3,267,177 - -0.7
3,267,727 - -0.5
3,268,439 - -0.6
3,268,552 + -0.3
3,269,138 - BPHYT_RS14320 0.27 +0.8
3,269,138 - BPHYT_RS14320 0.27 -0.2
3,269,180 - BPHYT_RS14320 0.29 -0.6
3,269,210 - BPHYT_RS14320 0.31 -0.5
3,269,210 - BPHYT_RS14320 0.31 +0.3

Or see this region's nucleotide sequence