Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12995

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12990 and BPHYT_RS12995 are separated by 741 nucleotidesBPHYT_RS12995 and BPHYT_RS13000 are separated by 79 nucleotidesBPHYT_RS13000 and BPHYT_RS13005 are separated by 100 nucleotides BPHYT_RS12990: BPHYT_RS12990 - iron transporter, at 2,971,006 to 2,971,272 _RS12990 BPHYT_RS12995: BPHYT_RS12995 - MFS transporter, at 2,972,014 to 2,973,483 _RS12995 BPHYT_RS13000: BPHYT_RS13000 - phosphodiesterase, at 2,973,563 to 2,974,051 _RS13000 BPHYT_RS13005: BPHYT_RS13005 - membrane protein, at 2,974,152 to 2,974,958 _RS13005 Position (kb) 2972 2973 2974Strain fitness (log2 ratio) -3 -2 -1 0 1at 2971.087 kb on + strand, within BPHYT_RS12990at 2971.088 kb on - strand, within BPHYT_RS12990at 2971.249 kb on + strandat 2971.249 kb on + strandat 2971.270 kb on + strandat 2971.270 kb on + strandat 2971.275 kb on + strandat 2971.275 kb on + strandat 2971.275 kb on + strandat 2971.276 kb on - strandat 2971.293 kb on + strandat 2973.454 kb on + strandat 2973.564 kb on + strandat 2973.862 kb on + strand, within BPHYT_RS13000at 2973.963 kb on + strand, within BPHYT_RS13000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,971,087 + BPHYT_RS12990 0.30 -2.6
2,971,088 - BPHYT_RS12990 0.31 -3.3
2,971,249 + -0.0
2,971,249 + +0.6
2,971,270 + -0.2
2,971,270 + -0.1
2,971,275 + +0.4
2,971,275 + -0.0
2,971,275 + -0.1
2,971,276 - -0.1
2,971,293 + +0.1
2,973,454 + -0.9
2,973,564 + +0.6
2,973,862 + BPHYT_RS13000 0.61 -0.3
2,973,963 + BPHYT_RS13000 0.82 -0.4

Or see this region's nucleotide sequence