Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07695

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07690 and BPHYT_RS07695 are separated by 141 nucleotidesBPHYT_RS07695 and BPHYT_RS07700 are separated by 41 nucleotides BPHYT_RS07690: BPHYT_RS07690 - AraC family transcriptional regulator, at 1,749,257 to 1,750,306 _RS07690 BPHYT_RS07695: BPHYT_RS07695 - acetylornithine aminotransferase, at 1,750,448 to 1,751,683 _RS07695 BPHYT_RS07700: BPHYT_RS07700 - arginine N-succinyltransferase, at 1,751,725 to 1,752,783 _RS07700 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -1 0 1at 1749.533 kb on + strand, within BPHYT_RS07690at 1750.055 kb on + strand, within BPHYT_RS07690at 1750.059 kb on - strand, within BPHYT_RS07690at 1750.173 kb on - strand, within BPHYT_RS07690at 1750.362 kb on + strandat 1750.362 kb on + strandat 1750.363 kb on - strandat 1750.363 kb on - strandat 1750.411 kb on + strandat 1750.411 kb on + strandat 1750.418 kb on - strandat 1750.420 kb on + strandat 1750.420 kb on + strandat 1750.835 kb on + strand, within BPHYT_RS07695at 1752.166 kb on + strand, within BPHYT_RS07700

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,749,533 + BPHYT_RS07690 0.26 -0.2
1,750,055 + BPHYT_RS07690 0.76 +0.7
1,750,059 - BPHYT_RS07690 0.76 -1.6
1,750,173 - BPHYT_RS07690 0.87 -0.2
1,750,362 + -0.3
1,750,362 + +0.1
1,750,363 - -0.4
1,750,363 - +0.4
1,750,411 + -0.9
1,750,411 + +0.9
1,750,418 - -1.4
1,750,420 + +1.7
1,750,420 + -1.6
1,750,835 + BPHYT_RS07695 0.31 -0.5
1,752,166 + BPHYT_RS07700 0.42 -0.4

Or see this region's nucleotide sequence