Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01560

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01555 and BPHYT_RS01560 are separated by 5 nucleotidesBPHYT_RS01560 and BPHYT_RS01565 are separated by 140 nucleotides BPHYT_RS01555: BPHYT_RS01555 - glutamyl-tRNA(Gln) amidotransferase subunit A, at 353,443 to 354,930 _RS01555 BPHYT_RS01560: BPHYT_RS01560 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 354,936 to 356,411 _RS01560 BPHYT_RS01565: BPHYT_RS01565 - polyphosphate kinase, at 356,552 to 357,391 _RS01565 Position (kb) 354 355 356 357Strain fitness (log2 ratio) -1 0 1at 356.522 kb on + strandat 356.523 kb on - strandat 356.591 kb on + strandat 356.960 kb on + strand, within BPHYT_RS01565at 357.203 kb on + strand, within BPHYT_RS01565at 357.203 kb on + strand, within BPHYT_RS01565at 357.203 kb on + strand, within BPHYT_RS01565at 357.260 kb on + strand, within BPHYT_RS01565

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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356,522 + -0.3
356,523 - -0.3
356,591 + -0.1
356,960 + BPHYT_RS01565 0.49 -0.5
357,203 + BPHYT_RS01565 0.78 +0.4
357,203 + BPHYT_RS01565 0.78 -0.2
357,203 + BPHYT_RS01565 0.78 -0.3
357,260 + BPHYT_RS01565 0.84 +0.3

Or see this region's nucleotide sequence