Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29400

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29395 and AO356_29400 overlap by 4 nucleotidesAO356_29400 and AO356_29405 are separated by 548 nucleotides AO356_29395: AO356_29395 - hypothetical protein, at 6,836,778 to 6,838,202 _29395 AO356_29400: AO356_29400 - peptidase M20, at 6,838,199 to 6,839,353 _29400 AO356_29405: AO356_29405 - alpha-ketoglutarate dehydrogenase, at 6,839,902 to 6,842,598 _29405 Position (kb) 6838 6839 6840Strain fitness (log2 ratio) -1 0 1 2at 6838.204 kb on + strandat 6838.205 kb on - strandat 6838.298 kb on + strandat 6838.298 kb on + strandat 6838.298 kb on + strandat 6838.298 kb on + strandat 6838.299 kb on - strandat 6838.629 kb on - strand, within AO356_29400at 6838.629 kb on - strand, within AO356_29400at 6839.129 kb on + strand, within AO356_29400at 6839.129 kb on + strand, within AO356_29400at 6839.130 kb on - strand, within AO356_29400at 6839.130 kb on - strand, within AO356_29400at 6839.385 kb on + strandat 6839.386 kb on - strandat 6839.386 kb on - strandat 6839.402 kb on + strandat 6839.417 kb on + strandat 6839.417 kb on + strandat 6839.417 kb on + strandat 6839.418 kb on - strandat 6839.418 kb on - strandat 6839.422 kb on - strandat 6840.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,838,204 + -1.3
6,838,205 - -0.6
6,838,298 + +0.2
6,838,298 + +0.5
6,838,298 + +0.1
6,838,298 + +0.0
6,838,299 - +1.0
6,838,629 - AO356_29400 0.37 +1.7
6,838,629 - AO356_29400 0.37 -0.2
6,839,129 + AO356_29400 0.81 +2.0
6,839,129 + AO356_29400 0.81 +0.4
6,839,130 - AO356_29400 0.81 +0.0
6,839,130 - AO356_29400 0.81 +0.2
6,839,385 + +0.2
6,839,386 - -0.0
6,839,386 - +0.7
6,839,402 + +0.5
6,839,417 + +0.7
6,839,417 + -0.5
6,839,417 + +1.0
6,839,418 - -0.4
6,839,418 - -0.7
6,839,422 - -0.6
6,840,152 + -1.0

Or see this region's nucleotide sequence