Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28840 and AO356_28845 overlap by 7 nucleotides AO356_28845 and AO356_28850 are separated by 43 nucleotides AO356_28850 and AO356_28855 are separated by 271 nucleotides
AO356_28840: AO356_28840 - iron-siderophore ABC transporter permease, at 6,707,241 to 6,708,302
_28840
AO356_28845: AO356_28845 - ferrichrome ABC transporter, at 6,708,296 to 6,709,051
_28845
AO356_28850: AO356_28850 - chemotaxis protein, at 6,709,095 to 6,711,056
_28850
AO356_28855: AO356_28855 - structural protein MipA, at 6,711,328 to 6,712,125
_28855
Position (kb)
6709
6710
6711
6712 Strain fitness (log2 ratio)
-1
0
1
2
3 at 6708.400 kb on - strand, within AO356_28845 at 6708.516 kb on - strand, within AO356_28845 at 6708.516 kb on - strand, within AO356_28845 at 6708.558 kb on - strand, within AO356_28845 at 6708.980 kb on + strand at 6708.981 kb on - strand at 6709.286 kb on + strand at 6709.287 kb on - strand at 6709.287 kb on - strand at 6709.698 kb on - strand, within AO356_28850 at 6709.770 kb on - strand, within AO356_28850 at 6710.070 kb on + strand, within AO356_28850 at 6710.101 kb on + strand, within AO356_28850 at 6710.101 kb on + strand, within AO356_28850 at 6710.102 kb on - strand, within AO356_28850 at 6710.102 kb on - strand, within AO356_28850 at 6710.423 kb on - strand, within AO356_28850 at 6710.494 kb on - strand, within AO356_28850 at 6710.612 kb on + strand, within AO356_28850 at 6710.615 kb on - strand, within AO356_28850 at 6710.681 kb on + strand, within AO356_28850 at 6710.682 kb on - strand, within AO356_28850 at 6710.956 kb on + strand at 6710.956 kb on + strand at 6710.957 kb on - strand at 6710.960 kb on + strand at 6711.102 kb on + strand at 6711.107 kb on + strand at 6711.108 kb on - strand at 6711.108 kb on - strand at 6711.108 kb on - strand at 6711.119 kb on + strand at 6711.120 kb on - strand at 6711.121 kb on + strand at 6711.121 kb on + strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.194 kb on + strand at 6711.194 kb on + strand at 6711.195 kb on - strand at 6711.195 kb on - strand at 6711.195 kb on - strand at 6711.196 kb on + strand at 6711.261 kb on - strand at 6711.261 kb on - strand at 6711.264 kb on + strand at 6711.374 kb on + strand at 6711.375 kb on - strand at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.486 kb on + strand, within AO356_28855 at 6711.526 kb on + strand, within AO356_28855 at 6711.649 kb on + strand, within AO356_28855 at 6711.650 kb on - strand, within AO356_28855 at 6711.650 kb on - strand, within AO356_28855 at 6711.898 kb on + strand, within AO356_28855 at 6711.899 kb on - strand, within AO356_28855 at 6711.943 kb on + strand, within AO356_28855 at 6711.944 kb on - strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.992 kb on - strand, within AO356_28855 at 6711.992 kb on - strand, within AO356_28855
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 6,708,400 - AO356_28845 0.14 -0.9 6,708,516 - AO356_28845 0.29 +0.4 6,708,516 - AO356_28845 0.29 -1.5 6,708,558 - AO356_28845 0.35 -1.1 6,708,980 + -0.1 6,708,981 - +0.3 6,709,286 + -0.3 6,709,287 - -1.2 6,709,287 - -0.2 6,709,698 - AO356_28850 0.31 +0.0 6,709,770 - AO356_28850 0.34 -0.6 6,710,070 + AO356_28850 0.50 +0.5 6,710,101 + AO356_28850 0.51 -1.4 6,710,101 + AO356_28850 0.51 +1.1 6,710,102 - AO356_28850 0.51 +0.1 6,710,102 - AO356_28850 0.51 +0.3 6,710,423 - AO356_28850 0.68 +1.4 6,710,494 - AO356_28850 0.71 -0.0 6,710,612 + AO356_28850 0.77 +0.0 6,710,615 - AO356_28850 0.77 -0.7 6,710,681 + AO356_28850 0.81 +0.8 6,710,682 - AO356_28850 0.81 -1.5 6,710,956 + -0.1 6,710,956 + +2.1 6,710,957 - -1.4 6,710,960 + +0.0 6,711,102 + +0.2 6,711,107 + -0.4 6,711,108 - +1.6 6,711,108 - -0.4 6,711,108 - -1.5 6,711,119 + +3.4 6,711,120 - -1.1 6,711,121 + -1.1 6,711,121 + +0.1 6,711,122 - +0.0 6,711,122 - +0.2 6,711,122 - -0.2 6,711,122 - +1.4 6,711,194 + -0.2 6,711,194 + -0.6 6,711,195 - -0.0 6,711,195 - -0.9 6,711,195 - +0.8 6,711,196 + -0.0 6,711,261 - +0.6 6,711,261 - -0.8 6,711,264 + +0.3 6,711,374 + +0.1 6,711,375 - +0.5 6,711,485 - AO356_28855 0.20 +1.1 6,711,485 - AO356_28855 0.20 -0.5 6,711,485 - AO356_28855 0.20 +0.5 6,711,485 - AO356_28855 0.20 +0.1 6,711,486 + AO356_28855 0.20 -0.2 6,711,526 + AO356_28855 0.25 -1.1 6,711,649 + AO356_28855 0.40 +0.7 6,711,650 - AO356_28855 0.40 -0.8 6,711,650 - AO356_28855 0.40 -0.3 6,711,898 + AO356_28855 0.71 +1.2 6,711,899 - AO356_28855 0.72 +0.3 6,711,943 + AO356_28855 0.77 +1.0 6,711,944 - AO356_28855 0.77 +0.8 6,711,991 + AO356_28855 0.83 -0.7 6,711,991 + AO356_28855 0.83 +0.3 6,711,991 + AO356_28855 0.83 -0.3 6,711,991 + AO356_28855 0.83 +0.3 6,711,991 + AO356_28855 0.83 -0.1 6,711,992 - AO356_28855 0.83 -0.1 6,711,992 - AO356_28855 0.83 -0.2
Or see this region's nucleotide sequence