Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15015

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15010 and AO356_15015 overlap by 16 nucleotidesAO356_15015 and AO356_15020 are separated by 11 nucleotides AO356_15010: AO356_15010 - hypothetical protein, at 3,393,125 to 3,394,834 _15010 AO356_15015: AO356_15015 - hypothetical protein, at 3,394,819 to 3,395,478 _15015 AO356_15020: AO356_15020 - hypothetical protein, at 3,395,490 to 3,400,043 _15020 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -2 -1 0 1 2at 3394.102 kb on - strand, within AO356_15010at 3394.235 kb on + strand, within AO356_15010at 3394.406 kb on - strand, within AO356_15010at 3394.406 kb on - strand, within AO356_15010at 3394.406 kb on - strand, within AO356_15010at 3394.424 kb on + strand, within AO356_15010at 3394.424 kb on + strand, within AO356_15010at 3394.425 kb on - strand, within AO356_15010at 3394.616 kb on + strand, within AO356_15010at 3394.697 kb on + strandat 3394.697 kb on + strandat 3394.697 kb on + strandat 3394.698 kb on - strandat 3394.698 kb on - strandat 3394.715 kb on + strandat 3394.748 kb on + strandat 3394.749 kb on - strandat 3394.757 kb on + strandat 3394.757 kb on + strandat 3394.925 kb on + strand, within AO356_15015at 3394.925 kb on + strand, within AO356_15015at 3394.925 kb on + strand, within AO356_15015at 3394.926 kb on - strand, within AO356_15015at 3394.926 kb on - strand, within AO356_15015at 3394.926 kb on - strand, within AO356_15015at 3395.006 kb on - strand, within AO356_15015at 3395.105 kb on - strand, within AO356_15015at 3395.188 kb on + strand, within AO356_15015at 3395.320 kb on + strand, within AO356_15015at 3395.320 kb on + strand, within AO356_15015at 3395.321 kb on - strand, within AO356_15015at 3395.329 kb on + strand, within AO356_15015at 3395.329 kb on + strand, within AO356_15015at 3395.330 kb on - strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.343 kb on + strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.344 kb on - strand, within AO356_15015at 3395.352 kb on + strand, within AO356_15015at 3395.703 kb on + strandat 3395.832 kb on + strandat 3395.832 kb on + strandat 3395.833 kb on - strandat 3395.833 kb on - strandat 3395.833 kb on - strandat 3395.889 kb on + strandat 3395.890 kb on - strandat 3395.890 kb on - strandat 3395.964 kb on + strand, within AO356_15020at 3395.964 kb on + strand, within AO356_15020at 3395.965 kb on - strand, within AO356_15020at 3395.965 kb on - strand, within AO356_15020at 3395.965 kb on - strand, within AO356_15020at 3396.120 kb on + strand, within AO356_15020at 3396.120 kb on + strand, within AO356_15020at 3396.121 kb on - strand, within AO356_15020at 3396.153 kb on + strand, within AO356_15020at 3396.154 kb on - strand, within AO356_15020at 3396.154 kb on - strand, within AO356_15020at 3396.154 kb on - strand, within AO356_15020at 3396.154 kb on - strand, within AO356_15020at 3396.154 kb on - strand, within AO356_15020at 3396.424 kb on + strand, within AO356_15020at 3396.444 kb on + strand, within AO356_15020at 3396.447 kb on + strand, within AO356_15020at 3396.448 kb on - strand, within AO356_15020at 3396.463 kb on - strand, within AO356_15020at 3396.477 kb on + strand, within AO356_15020at 3396.477 kb on + strand, within AO356_15020at 3396.478 kb on - strand, within AO356_15020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,394,102 - AO356_15010 0.57 +0.5
3,394,235 + AO356_15010 0.65 +0.3
3,394,406 - AO356_15010 0.75 +0.5
3,394,406 - AO356_15010 0.75 +0.7
3,394,406 - AO356_15010 0.75 -0.2
3,394,424 + AO356_15010 0.76 -0.4
3,394,424 + AO356_15010 0.76 -0.2
3,394,425 - AO356_15010 0.76 -0.2
3,394,616 + AO356_15010 0.87 +1.7
3,394,697 + -0.2
3,394,697 + -0.2
3,394,697 + +0.5
3,394,698 - +0.3
3,394,698 - -0.4
3,394,715 + +0.8
3,394,748 + +1.2
3,394,749 - -1.3
3,394,757 + -0.3
3,394,757 + +0.3
3,394,925 + AO356_15015 0.16 +0.5
3,394,925 + AO356_15015 0.16 +0.1
3,394,925 + AO356_15015 0.16 +1.9
3,394,926 - AO356_15015 0.16 +0.0
3,394,926 - AO356_15015 0.16 +0.2
3,394,926 - AO356_15015 0.16 +0.9
3,395,006 - AO356_15015 0.28 +0.3
3,395,105 - AO356_15015 0.43 +0.3
3,395,188 + AO356_15015 0.56 +0.2
3,395,320 + AO356_15015 0.76 +0.5
3,395,320 + AO356_15015 0.76 +0.4
3,395,321 - AO356_15015 0.76 -0.2
3,395,329 + AO356_15015 0.77 +0.5
3,395,329 + AO356_15015 0.77 -1.5
3,395,330 - AO356_15015 0.77 +0.5
3,395,343 + AO356_15015 0.79 +0.7
3,395,343 + AO356_15015 0.79 +1.0
3,395,343 + AO356_15015 0.79 +1.5
3,395,343 + AO356_15015 0.79 -0.5
3,395,343 + AO356_15015 0.79 -1.5
3,395,343 + AO356_15015 0.79 +0.2
3,395,343 + AO356_15015 0.79 -0.8
3,395,343 + AO356_15015 0.79 -0.2
3,395,344 - AO356_15015 0.80 +0.4
3,395,344 - AO356_15015 0.80 +0.7
3,395,344 - AO356_15015 0.80 -0.3
3,395,344 - AO356_15015 0.80 +0.1
3,395,344 - AO356_15015 0.80 +0.2
3,395,344 - AO356_15015 0.80 -2.1
3,395,344 - AO356_15015 0.80 +0.4
3,395,344 - AO356_15015 0.80 -0.6
3,395,344 - AO356_15015 0.80 +0.3
3,395,352 + AO356_15015 0.81 -0.2
3,395,703 + +0.3
3,395,832 + +0.2
3,395,832 + +0.5
3,395,833 - -0.9
3,395,833 - +0.7
3,395,833 - -0.5
3,395,889 + +1.8
3,395,890 - +0.1
3,395,890 - -0.7
3,395,964 + AO356_15020 0.10 -0.5
3,395,964 + AO356_15020 0.10 +0.5
3,395,965 - AO356_15020 0.10 -0.1
3,395,965 - AO356_15020 0.10 -0.9
3,395,965 - AO356_15020 0.10 -0.2
3,396,120 + AO356_15020 0.14 +0.1
3,396,120 + AO356_15020 0.14 +0.9
3,396,121 - AO356_15020 0.14 -1.3
3,396,153 + AO356_15020 0.15 +0.7
3,396,154 - AO356_15020 0.15 +0.3
3,396,154 - AO356_15020 0.15 +0.2
3,396,154 - AO356_15020 0.15 +0.7
3,396,154 - AO356_15020 0.15 +0.7
3,396,154 - AO356_15020 0.15 +1.2
3,396,424 + AO356_15020 0.21 -0.2
3,396,444 + AO356_15020 0.21 -1.0
3,396,447 + AO356_15020 0.21 +0.6
3,396,448 - AO356_15020 0.21 -0.1
3,396,463 - AO356_15020 0.21 +0.1
3,396,477 + AO356_15020 0.22 +1.4
3,396,477 + AO356_15020 0.22 +0.8
3,396,478 - AO356_15020 0.22 -0.0

Or see this region's nucleotide sequence